Detailed information NTG0683929

Bioinformatically predicted

Overview

• Name: tsaP
• Type: Machinery gene
• Locus tag: PALA52_RS00100
• Genome accession: NZ_CP110347
• Coordinates: 21241..22266 (+)
• Length: 341 a.a.
• NCBI ID: WP_024918144.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA52
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 16241..27266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA52_RS00075 (PALA52_00015)	-	16429..16746 (-)	318	WP_024918147.1	tetratricopeptide repeat protein	-
PALA52_RS00080 (PALA52_00016)	trkA	16895..18268 (-)	1374	WP_003107053.1	Trk system potassium transporter TrkA	-
PALA52_RS00085 (PALA52_00017)	rsmB	18296..19600 (-)	1305	WP_121128059.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
PALA52_RS00090 (PALA52_00018)	fmt	19597..20541 (-)	945	WP_121128061.1	methionyl-tRNA formyltransferase	-
PALA52_RS00095 (PALA52_00019)	def	20596..21102 (-)	507	WP_003097293.1	peptide deformylase	-
PALA52_RS00100 (PALA52_00020)	tsaP	21241..22266 (+)	1026	WP_024918144.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
PALA52_RS00105 (PALA52_00021)	dprA	22401..23486 (+)	1086	WP_174215183.1	DNA-processing protein DprA	Machinery gene
PALA52_RS00110 (PALA52_00022)	-	23527..24084 (+)	558	WP_024918142.1	L-threonylcarbamoyladenylate synthase	-
PALA52_RS00115 (PALA52_00023)	-	24094..25071 (-)	978	WP_121128065.1	NADPH:quinone reductase	-
PALA52_RS00120 (PALA52_00024)	hemF	25262..26179 (+)	918	WP_263957481.1	oxygen-dependent coproporphyrinogen oxidase	-
PALA52_RS00125 (PALA52_00025)	aroE	26237..27061 (+)	825	WP_024918139.1	shikimate dehydrogenase	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37571.98 Da
• Isoelectric Point: 9.3358

>NTDB_id=683929 PALA52_RS00100 WP_024918144.1 21241..22266(+) (tsaP) [Pseudomonas aeruginosa strain PALA52]
MRKSLVALLLLAASGLAQAQVDLREGHPDRYTVVRGDTLWDISGKFLRQPWKWPELWHANPQIQNPHLIYPGDTLSLVYV
DGQPRLVLNRGESRGTIKLSPKIRSTPIAEAIPTIPLDKINSFLLANRIVDDEKTFTSAPYIVAGNAERIVSGTGDRVYA
RGKFADGQPAYGIFRQGKVYIDPKTKEVLGINADDIGGGEVVATEGDVATLALTRTTQEVRLGDRLFPTEERAVNSTFMP
GEPSREVKGEIIDVPRGVTQIGQFDVVTLNRGQRDGLAEGNVLAIYKVGETVRDRVTGESVKIPDERAGLLMVFRTYKKL
SYALVLMASRPLSVTDRVQNP

Nucleotide

• Length: 1026 bp

>NTDB_id=683929 PALA52_RS00100 WP_024918144.1 21241..22266(+) (tsaP) [Pseudomonas aeruginosa strain PALA52]
ATGAGGAAATCACTAGTCGCCCTTCTGCTCCTTGCCGCGAGCGGTCTGGCGCAGGCCCAGGTCGACCTCAGGGAAGGGCA
TCCGGACCGCTACACGGTGGTCAGGGGCGATACCCTGTGGGACATCTCGGGGAAATTCCTCCGTCAGCCATGGAAGTGGC
CGGAACTCTGGCACGCCAACCCGCAAATCCAGAATCCCCACCTGATCTACCCCGGCGACACCCTCAGCCTGGTCTACGTC
GATGGCCAGCCGCGCCTGGTGCTGAACCGTGGCGAATCGCGTGGGACCATCAAGCTGTCGCCGAAGATCCGCAGCACGCC
GATCGCCGAGGCCATCCCGACCATCCCGCTGGACAAGATCAACAGCTTCCTGCTGGCCAACCGCATCGTCGATGACGAGA
AGACCTTCACCAGTGCGCCGTACATCGTCGCCGGCAACGCCGAGCGGATCGTCAGCGGCACCGGCGACCGAGTCTACGCC
CGCGGCAAGTTCGCTGACGGCCAGCCGGCCTATGGCATCTTCCGCCAGGGCAAGGTCTACATCGATCCTAAGACCAAGGA
AGTCCTCGGCATCAACGCCGATGACATCGGCGGCGGCGAGGTGGTGGCCACCGAAGGCGACGTCGCGACCCTGGCGCTGA
CCCGCACGACCCAGGAAGTGCGCCTGGGCGACCGCCTGTTCCCCACCGAGGAGCGTGCGGTGAATTCCACCTTCATGCCC
GGCGAGCCGAGCCGCGAGGTGAAGGGCGAAATCATCGACGTACCGCGCGGCGTGACCCAGATCGGCCAGTTCGACGTGGT
CACCCTGAACCGTGGCCAGCGCGACGGGCTGGCCGAGGGCAACGTGCTGGCGATCTACAAGGTCGGCGAGACGGTGCGCG
ACCGAGTTACCGGTGAGTCGGTGAAGATTCCCGACGAACGCGCCGGCCTGCTGATGGTGTTCCGTACCTACAAGAAGCTG
AGCTACGCCCTGGTTCTGATGGCCAGCAGGCCGCTCTCGGTAACCGACAGGGTGCAGAATCCCTGA

Domains

Predicted by InterProScan.

• LysM domain (LysM) (31-76)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
tsaP	Acinetobacter baumannii D1279779	36.24	100	0.39