Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   PALA35_RS10880 Genome accession   NZ_CP110346
Coordinates   2293953..2294309 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain PALA35     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2288953..2299309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA35_RS10855 (PALA35_02161) fabF 2289165..2290409 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  PALA35_RS10860 (PALA35_02162) pabC 2290409..2291224 (+) 816 WP_003110198.1 aminodeoxychorismate lyase -
  PALA35_RS10865 (PALA35_02163) mltG 2291230..2292279 (+) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  PALA35_RS10870 (PALA35_02164) tmk 2292308..2292940 (+) 633 WP_003122486.1 dTMP kinase -
  PALA35_RS10875 (PALA35_02165) - 2292933..2293919 (+) 987 WP_023875119.1 DNA polymerase III subunit delta' -
  PALA35_RS10880 (PALA35_02166) pilZ 2293953..2294309 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  PALA35_RS10885 (PALA35_02167) - 2294324..2295100 (+) 777 WP_003091117.1 TatD family hydrolase -
  PALA35_RS10890 (PALA35_02168) - 2295326..2296459 (-) 1134 WP_023106226.1 aminotransferase class V-fold PLP-dependent enzyme -
  PALA35_RS10895 (PALA35_02169) - 2296545..2297183 (+) 639 WP_023091594.1 TetR/AcrR family transcriptional regulator -
  PALA35_RS10900 (PALA35_02170) - 2297350..2298246 (+) 897 WP_003091113.1 radical SAM protein -
  PALA35_RS10905 (PALA35_02171) - 2298311..2298943 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=683860 PALA35_RS10880 WP_003091119.1 2293953..2294309(+) (pilZ) [Pseudomonas aeruginosa strain PALA35]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=683860 PALA35_RS10880 WP_003091119.1 2293953..2294309(+) (pilZ) [Pseudomonas aeruginosa strain PALA35]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449