Detailed information NTG0683847

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA35_RS07140
• Genome accession: NZ_CP110346
• Coordinates: 1511725..1512729 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA35
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1506725..1517729

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA35_RS07110 (PALA35_01421)	fghA	1506817..1507668 (+)	852	WP_009876912.1	S-formylglutathione hydrolase	-
PALA35_RS07115 (PALA35_01422)	ispF	1507739..1508212 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA35_RS07120 (PALA35_01423)	truD	1508209..1509276 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
PALA35_RS07125 (PALA35_01424)	surE	1509264..1510013 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA35_RS07130 (PALA35_01425)	-	1510046..1510681 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA35_RS07135 (PALA35_01426)	-	1510727..1511620 (+)	894	WP_023089397.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA35_RS07140 (PALA35_01427)	rpoS	1511725..1512729 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA35_RS07145 (PALA35_01428)	fdxA	1513156..1513479 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA35_RS07150 (PALA35_01429)	mutS	1513546..1516113 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PALA35_RS07155 (PALA35_01430)	-	1516239..1517246 (-)	1008	WP_003092265.1	TolB family protein	-
PALA35_RS07160 (PALA35_01431)	-	1517361..1517585 (-)	225	WP_073646261.1	DUF7364 domain-containing protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=683847 PALA35_RS07140 WP_003113871.1 1511725..1512729(+) (rpoS) [Pseudomonas aeruginosa strain PALA35]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=683847 PALA35_RS07140 WP_003113871.1 1511725..1512729(+) (rpoS) [Pseudomonas aeruginosa strain PALA35]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653