Detailed information NTG0683741

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA30_RS07125
• Genome accession: NZ_CP110345
• Coordinates: 1525178..1526182 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA30
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1520178..1531182

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA30_RS07095 (PALA30_01405)	fghA	1520270..1521121 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
PALA30_RS07100 (PALA30_01406)	ispF	1521192..1521665 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA30_RS07105 (PALA30_01407)	truD	1521662..1522729 (+)	1068	WP_058176082.1	tRNA pseudouridine(13) synthase TruD	-
PALA30_RS07110 (PALA30_01408)	surE	1522717..1523466 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA30_RS07115 (PALA30_01409)	-	1523499..1524134 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA30_RS07120 (PALA30_01410)	-	1524180..1525073 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA30_RS07125 (PALA30_01411)	rpoS	1525178..1526182 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA30_RS07130 (PALA30_01412)	fdxA	1526609..1526932 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA30_RS07135 (PALA30_01413)	mutS	1526999..1529566 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
PALA30_RS07140 (PALA30_01414)	-	1529692..1530699 (-)	1008	WP_058176081.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=683741 PALA30_RS07125 WP_003113871.1 1525178..1526182(+) (rpoS) [Pseudomonas aeruginosa strain PALA30]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=683741 PALA30_RS07125 WP_003113871.1 1525178..1526182(+) (rpoS) [Pseudomonas aeruginosa strain PALA30]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGACCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653