Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SNAG_RS08405 Genome accession   NZ_AP017652
Coordinates   1658908..1660677 (-) Length   589 a.a.
NCBI ID   WP_096408389.1    Uniprot ID   -
Organism   Streptococcus sp. NPS 308     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1653908..1665677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS08375 (SNAG_1640) - 1654507..1654872 (-) 366 WP_000216432.1 Asp23/Gls24 family envelope stress response protein -
  SNAG_RS08380 (SNAG_1641) rpmB 1655025..1655213 (-) 189 WP_001140948.1 50S ribosomal protein L28 -
  SNAG_RS08385 (SNAG_1642) - 1655319..1655993 (-) 675 WP_061407284.1 hypothetical protein -
  SNAG_RS08390 (SNAG_1643) - 1655999..1656445 (-) 447 WP_096408382.1 LytTR family DNA-binding domain-containing protein -
  SNAG_RS08395 (SNAG_1644) - 1656559..1657062 (-) 504 WP_096408384.1 phosphatase PAP2 family protein -
  SNAG_RS08400 (SNAG_1645) rcrQ 1657158..1658918 (-) 1761 WP_096408387.1 ABC transporter ATP-binding protein Regulator
  SNAG_RS08405 (SNAG_1646) rcrP 1658908..1660677 (-) 1770 WP_096408389.1 ABC transporter ATP-binding protein Regulator
  SNAG_RS08410 (SNAG_1647) - 1660661..1661122 (-) 462 WP_096408392.1 MarR family winged helix-turn-helix transcriptional regulator -
  SNAG_RS08415 (SNAG_1648) - 1661313..1662017 (+) 705 WP_096408394.1 CD20-like domain-containing protein -
  SNAG_RS08420 (SNAG_1649) - 1662065..1662781 (-) 717 WP_096408397.1 YebC/PmpR family DNA-binding transcriptional regulator -
  SNAG_RS08425 (SNAG_1650) - 1662878..1664248 (-) 1371 WP_096408399.1 MATE family efflux transporter -
  SNAG_RS08430 (SNAG_1651) - 1664358..1664912 (+) 555 WP_096408402.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65323.68 Da        Isoelectric Point: 6.1096

>NTDB_id=68369 SNAG_RS08405 WP_096408389.1 1658908..1660677(-) (rcrP) [Streptococcus sp. NPS 308]
MKKLAKRITGKEWGMILLTVLFTCFSVYLELEVPTYISEITALLGTPGTELGELWSPALKMMGLSLLAFLTSVTVGFFAA
RVAASYTAHLRSDIFNRVLDYSQTEIKRFSIPSLLTRTTNDITQVQMLFTMGLQVVTRGPIMAIWAIGKILGKSEYWLWA
VVVAVIVNVLMTTVLMTLAFPKQSVIQKLTDKLNSITRESLTGIRVVRAYNAEDYQDKKFEEANDEVTRLNLFVNRLMAI
MNPIMMGISSGLSLAIYWIGAYIINDASLTERLPLFSDMVVFMSYAMQVVMGFLLMGALFIVLPRTLVSAGRINQVLDLH
SSIKNPSHPQTANPSVKGQVEFRDVTFRYSQNSEAVVEQVTFKAEAGQTIAFIGSTGSGKSTLVNLLPRFYDVSAGQILV
DGVNVQDYDLEDLRNKVGYIPQKAVLFSGDVKGNLDFGQSQESPLSEAAMWQALELAQSKTFIEDKEAGLASEVAQGGTN
FSGGQRQRLAIARALARKPEILIFDDSFSALDYKTDRNLRQELAEKTQSMTKLIVAQRISTIMDADLIIVLDQGKVVGQG
THKELLATNEVYQEIAYSQLSKEELEHGK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=68369 SNAG_RS08405 WP_096408389.1 1658908..1660677(-) (rcrP) [Streptococcus sp. NPS 308]
ATGAAGAAACTCGCTAAACGTATTACAGGAAAAGAATGGGGCATGATTCTCCTGACTGTTCTTTTTACCTGTTTCTCGGT
CTATCTCGAGTTAGAAGTACCGACTTATATTTCAGAAATTACAGCATTACTTGGAACACCAGGTACGGAGTTGGGAGAGC
TTTGGTCACCAGCCCTTAAGATGATGGGCTTGTCACTTTTGGCCTTTCTAACATCCGTAACAGTGGGATTTTTTGCGGCT
CGTGTTGCAGCCTCCTATACGGCTCATCTACGTAGTGATATTTTTAATCGTGTATTAGATTATTCTCAGACAGAAATTAA
ACGTTTCTCTATTCCTAGTCTCTTGACTCGGACGACCAATGATATTACCCAGGTACAGATGCTCTTTACCATGGGCTTGC
AAGTGGTTACTCGTGGGCCGATTATGGCTATCTGGGCCATTGGAAAAATCCTTGGCAAGTCTGAATACTGGCTCTGGGCA
GTAGTGGTTGCTGTTATCGTCAATGTTTTGATGACCACTGTTCTCATGACTCTTGCCTTTCCAAAACAATCTGTCATCCA
GAAGTTGACAGATAAACTCAATAGCATCACCCGTGAAAGTCTGACAGGGATTCGAGTTGTTCGTGCCTATAATGCTGAGG
ATTATCAAGACAAGAAATTCGAAGAAGCCAATGATGAGGTGACTCGACTTAATCTCTTTGTCAACCGTTTGATGGCCATT
ATGAATCCCATTATGATGGGGATTTCGAGTGGCTTGAGTTTAGCTATTTACTGGATTGGAGCCTATATCATCAACGATGC
TAGCTTGACAGAACGTCTGCCCCTTTTTAGCGATATGGTGGTCTTCATGTCCTATGCCATGCAAGTCGTAATGGGCTTCT
TGCTCATGGGTGCTCTCTTTATCGTCCTTCCTCGTACCTTGGTTTCTGCTGGGCGTATCAATCAAGTATTGGATCTGCAT
TCTTCTATTAAAAATCCTAGTCACCCACAGACGGCAAACCCTTCTGTGAAAGGTCAAGTGGAATTCCGTGATGTAACCTT
CCGCTACTCTCAAAACTCAGAAGCAGTTGTGGAACAGGTTACTTTCAAAGCCGAAGCAGGGCAAACCATTGCTTTTATTG
GTTCAACTGGTTCAGGGAAATCGACACTTGTTAATCTCTTGCCTCGTTTTTATGATGTCTCAGCTGGTCAAATCTTAGTC
GACGGTGTCAATGTGCAAGATTACGACTTGGAAGATTTGCGCAATAAAGTCGGCTATATCCCTCAAAAAGCTGTGCTCTT
TTCTGGAGATGTTAAGGGAAACTTAGACTTTGGTCAGAGTCAAGAAAGTCCTCTAAGCGAAGCTGCTATGTGGCAAGCTC
TGGAATTGGCTCAGTCTAAAACCTTTATCGAGGATAAAGAAGCAGGCCTAGCTTCAGAAGTGGCCCAAGGCGGGACCAAC
TTCTCAGGAGGTCAAAGACAACGTTTGGCCATTGCACGCGCCTTGGCTCGTAAGCCTGAAATTCTCATTTTTGATGATTC
CTTCTCGGCCTTGGACTACAAGACAGACCGGAACCTGCGCCAAGAACTAGCAGAGAAAACACAATCCATGACCAAGCTCA
TCGTAGCGCAACGGATTTCTACCATTATGGATGCTGACCTAATCATAGTTTTGGATCAAGGTAAAGTCGTGGGACAAGGC
ACCCACAAGGAACTTCTAGCTACCAATGAAGTTTACCAAGAAATTGCCTATTCACAACTATCGAAGGAGGAATTGGAACA
TGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-292)

ABC transporter (ABC_tran)

(358-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

65.058

100

0.664

Multiple sequence alignment