Detailed information NTG0683637

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA24_RS06890
• Genome accession: NZ_CP110344
• Coordinates: 1475203..1476207 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA24
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1470203..1481207

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA24_RS06860 (PALA24_01366)	fghA	1470295..1471146 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PALA24_RS06865 (PALA24_01367)	ispF	1471217..1471690 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA24_RS06870 (PALA24_01368)	truD	1471687..1472754 (+)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PALA24_RS06875 (PALA24_01369)	surE	1472742..1473491 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA24_RS06880 (PALA24_01370)	-	1473524..1474159 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA24_RS06885 (PALA24_01371)	-	1474205..1475098 (+)	894	WP_010791885.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA24_RS06890 (PALA24_01372)	rpoS	1475203..1476207 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA24_RS06895 (PALA24_01373)	fdxA	1476634..1476957 (-)	324	WP_003119354.1	ferredoxin FdxA	-
PALA24_RS06900 (PALA24_01374)	mutS	1477024..1479591 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA24_RS06905 (PALA24_01375)	-	1479717..1480724 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=683637 PALA24_RS06890 WP_003113871.1 1475203..1476207(+) (rpoS) [Pseudomonas aeruginosa strain PALA24]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=683637 PALA24_RS06890 WP_003113871.1 1475203..1476207(+) (rpoS) [Pseudomonas aeruginosa strain PALA24]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653