Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OLL86_RS10060 Genome accession   NZ_CP110225
Coordinates   2141161..2143995 (-) Length   944 a.a.
NCBI ID   WP_264779965.1    Uniprot ID   -
Organism   Gallibacterium anatis strain IMT49310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2136161..2148995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLL86_RS10035 (OLL86_10035) - 2136930..2137235 (+) 306 WP_264779961.1 transposase -
  OLL86_RS10040 (OLL86_10040) - 2137214..2138065 (+) 852 WP_264779962.1 IS3 family transposase -
  OLL86_RS10045 (OLL86_10045) - 2138229..2138867 (-) 639 WP_021462095.1 RloB family protein -
  OLL86_RS10050 (OLL86_10050) - 2138867..2140171 (-) 1305 WP_264779963.1 ATP/GTP-binding protein -
  OLL86_RS10055 (OLL86_10055) - 2140290..2140874 (-) 585 WP_264779964.1 hypothetical protein -
  OLL86_RS10060 (OLL86_10060) uvrA 2141161..2143995 (-) 2835 WP_264779965.1 excinuclease ABC subunit UvrA Machinery gene
  OLL86_RS10065 (OLL86_10065) ssb 2144137..2144652 (+) 516 WP_018347305.1 single-stranded DNA-binding protein Machinery gene
  OLL86_RS10070 (OLL86_10070) - 2144749..2145291 (-) 543 WP_021462092.1 LysR substrate-binding domain-containing protein -
  OLL86_RS10075 (OLL86_10075) - 2145322..2145759 (+) 438 Protein_1942 amidophosphoribosyltransferase -
  OLL86_RS10080 (OLL86_10080) - 2145759..2146334 (+) 576 WP_021462090.1 UbiX family flavin prenyltransferase -
  OLL86_RS10085 (OLL86_10085) - 2146698..2147108 (+) 411 WP_021462089.1 DUF805 domain-containing protein -
  OLL86_RS10090 (OLL86_10090) - 2147239..2148306 (+) 1068 WP_021462088.1 DarT ssDNA thymidine ADP-ribosyltransferase family protein -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 104955.80 Da        Isoelectric Point: 6.6944

>NTDB_id=683606 OLL86_RS10060 WP_264779965.1 2141161..2143995(-) (uvrA) [Gallibacterium anatis strain IMT49310]
MDNIEIRGARTHNLKNINLTIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTITEVYDYLRLLFARVGEPRCPTHNIPLTAQTISQMVDKILSLPEGSRMMLLAPVVKARKG
EHTKLLDNIAAQGYIRARIDGEICDLSDPPQLELQKKHTIEVIVDRFKIRPELSSRLAESLETALELSGGIVVVANMDDS
SAEELVFSANFACPHCGYSLPELEPRMFSFNNPAGACPTCDGLGIQQYFDEHRVVQNPSLSLAGGAIRGWDRRNFYYYQM
LTSLARHYHFDIEEPFEELPQKIQHLVLHGSGHEKIEFQYMNDRGDTIVRHHPFEGVLNNMARRYKETESMSVREDLAKY
ISTRPCQTCRGSRLKEEARHVFIGETTLPQISEMSIGEALHHFEQLQFEGQKAKIAEKILKEIKERLQFLVNVGLEYLSL
SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRDLGNTVIVVEHDEDAIRTADHIIDI
GPGAGVHGGEVIAQGTAQQIMQDPNSLTGRFLSGKEKIDIPAARTPIKPEKILRLIGASGNNLKNVDLEIPVGLFTCITG
VSGSGKSTLINDTLFPIAQNALNRAENQQHAPFKAIEGLEFFDKVINIDQSPIGRTPRSNPATYTGVFTPIRELFAGVPE
ARARGYNPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIRYKGKTIHQVLEMTVEEAREFF
DAVPMIARKLQTLIDVGLSYIRLGQASTTLSGGEAQRVKLASELSKRDTGKTLYILDEPTTGLHFADIKQLLEVLHRLRD
QGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEIIAKGTPEQVAAMPHSHTARFLKPILDKQK

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=683606 OLL86_RS10060 WP_264779965.1 2141161..2143995(-) (uvrA) [Gallibacterium anatis strain IMT49310]
ATGGACAATATCGAAATTCGGGGCGCAAGAACCCATAATTTAAAAAATATTAATTTAACCATTCCACGCAACAAATTGGT
GGTAATCACCGGTTTATCCGGCTCGGGAAAGTCTTCGTTAGCATTTGACACCCTCTATGCCGAAGGGCAGCGGCGTTATG
TGGAATCACTTTCCGCTTATGCTCGCCAGTTTCTCTCTTTGATGGAAAAACCGGATGTGGATCATATCGAAGGTTTATCA
CCGGCGATCTCGATTGAACAGAAATCCACCTCACATAACCCTCGATCCACTGTCGGTACCATTACCGAAGTTTATGATTA
TTTAAGACTGCTGTTTGCTCGCGTCGGCGAACCACGTTGCCCGACACACAACATTCCATTAACAGCACAAACTATCAGTC
AAATGGTGGATAAAATTCTTTCTTTGCCGGAAGGCAGCCGAATGATGTTGCTTGCGCCGGTCGTGAAAGCACGCAAAGGC
GAGCACACCAAATTGTTGGATAACATTGCCGCACAAGGCTATATTCGCGCCAGAATTGACGGCGAAATCTGTGATCTCTC
CGATCCGCCACAACTGGAATTGCAAAAGAAACACACCATTGAAGTGATTGTCGATCGCTTCAAAATCCGCCCTGAATTAT
CAAGCCGTTTAGCGGAATCATTGGAAACCGCACTGGAACTTTCCGGCGGTATTGTGGTGGTCGCCAATATGGATGACAGC
AGTGCCGAAGAGCTGGTTTTCTCTGCCAACTTTGCCTGTCCGCATTGCGGATATTCTTTGCCGGAACTAGAACCACGAAT
GTTCTCGTTTAATAATCCGGCAGGGGCTTGCCCTACTTGTGACGGCTTAGGCATTCAACAATATTTTGACGAACATCGTG
TGGTGCAAAACCCAAGTTTATCCCTTGCCGGCGGCGCAATTCGTGGTTGGGATCGCCGCAATTTCTATTATTACCAAATG
CTGACCTCGCTCGCGCGCCATTATCACTTTGATATTGAAGAGCCGTTTGAAGAATTACCACAAAAAATTCAACATTTGGT
GTTGCACGGTTCCGGTCACGAAAAAATTGAATTTCAATATATGAACGATCGTGGCGACACCATCGTGCGTCATCACCCAT
TTGAGGGAGTGTTGAACAATATGGCGCGCCGCTACAAAGAAACCGAGTCAATGTCGGTGCGTGAAGATTTGGCAAAATAT
ATCAGCACCCGTCCTTGCCAAACTTGCCGCGGTTCTCGTCTAAAAGAAGAGGCTCGCCACGTCTTTATCGGCGAAACCAC
GTTGCCACAAATTTCTGAAATGAGTATCGGCGAAGCATTACACCATTTTGAACAATTACAGTTTGAAGGGCAAAAAGCCA
AAATTGCGGAAAAAATCTTAAAAGAGATTAAAGAACGGCTTCAGTTTTTAGTCAATGTCGGTCTGGAATATCTCTCTTTA
TCACGTTCCGCCGAAACACTCTCCGGCGGTGAAGCACAGCGTATTCGTCTTGCCAGCCAAATTGGGGCAGGCTTGGTCGG
CGTGATGTATGTGTTGGACGAACCTTCTATCGGCTTGCATCAACGTGATAATGAACGGTTGTTAAATACCTTGATTCACC
TAAGAGATTTAGGCAATACCGTAATTGTGGTTGAACACGACGAAGATGCGATTCGTACCGCCGACCACATCATCGATATT
GGGCCGGGAGCCGGCGTACACGGCGGTGAAGTGATTGCACAAGGTACAGCACAACAGATTATGCAAGATCCGAATTCGCT
TACCGGACGTTTTCTTTCCGGCAAAGAGAAAATCGACATTCCGGCAGCAAGAACACCGATCAAACCGGAAAAAATATTAC
GCCTGATCGGGGCGAGCGGTAACAATTTAAAAAATGTCGATTTAGAAATTCCGGTCGGTTTATTCACCTGTATCACCGGA
GTTTCTGGCTCAGGGAAATCGACCTTAATAAACGATACCTTATTCCCAATTGCACAAAATGCGCTTAACCGTGCTGAAAA
TCAGCAACACGCACCGTTTAAAGCCATCGAAGGATTAGAGTTTTTCGACAAAGTAATCAATATCGATCAAAGCCCAATCG
GACGCACGCCAAGATCCAATCCGGCAACTTATACCGGTGTGTTTACGCCTATTCGTGAGCTTTTCGCCGGCGTACCGGAA
GCGCGCGCAAGAGGATATAATCCGGGACGCTTCAGTTTTAATGTGCGTGGCGGTCGTTGTGAAGCCTGCCAAGGGGACGG
TGTGATTAAAGTCGAAATGCACTTTCTGCCGGATATTTATGTGCCGTGCGATCAATGTAAGGGCAAACGCTACAATCGCG
AAACATTGGAAATCCGTTATAAAGGCAAAACCATTCATCAAGTGTTGGAAATGACGGTCGAAGAAGCACGCGAATTTTTT
GATGCCGTGCCAATGATCGCTCGTAAATTACAAACATTAATTGATGTTGGCTTGTCTTATATTCGCCTTGGTCAAGCTTC
AACAACTCTGTCAGGCGGTGAAGCACAACGGGTCAAATTGGCATCGGAACTATCTAAGCGTGATACTGGAAAAACACTCT
ATATTCTTGATGAGCCTACAACCGGACTGCATTTTGCCGACATCAAACAATTATTGGAAGTGCTCCATCGTTTACGCGAT
CAAGGCAACACCATTGTTGTAATTGAACACAATTTGGATGTGATTAAAACTGCCGATTGGATTGTCGATTTAGGGCCGGA
GGGTGGCAGCGGCGGCGGCGAAATCATCGCCAAAGGCACGCCGGAACAAGTCGCAGCAATGCCTCATTCGCACACCGCAA
GGTTTTTAAAACCGATTTTGGATAAACAAAAATAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-399)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.766

99.576

0.575
  uvrA Streptococcus pneumoniae TIGR4

57.766

99.576

0.575
  uvrA Streptococcus pneumoniae D39

57.766

99.576

0.575