Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   OLL86_RS00800 Genome accession   NZ_CP110225
Coordinates   168238..170061 (+) Length   607 a.a.
NCBI ID   WP_264780113.1    Uniprot ID   -
Organism   Gallibacterium anatis strain IMT49310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 163238..175061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLL86_RS00780 (OLL86_00780) msbA 164516..166264 (+) 1749 WP_013745483.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  OLL86_RS00785 (OLL86_00785) lpxK 166285..167262 (+) 978 WP_264780110.1 tetraacyldisaccharide 4'-kinase -
  OLL86_RS00790 (OLL86_00790) - 167259..167456 (+) 198 WP_264780111.1 Trm112 family protein -
  OLL86_RS00795 (OLL86_00795) kdsB 167458..168234 (+) 777 WP_264780112.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OLL86_RS00800 (OLL86_00800) uvrC 168238..170061 (+) 1824 WP_264780113.1 excinuclease ABC subunit UvrC Machinery gene
  OLL86_RS00805 (OLL86_00805) pgsA 170137..170685 (+) 549 WP_018346416.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  OLL86_RS00810 (OLL86_00810) fabR 170746..171363 (-) 618 WP_018346415.1 HTH-type transcriptional repressor FabR -
  OLL86_RS00815 (OLL86_00815) oxyR 171366..172280 (-) 915 WP_021461082.1 DNA-binding transcriptional regulator OxyR -
  OLL86_RS00820 (OLL86_00820) - 172346..172774 (-) 429 WP_264780114.1 DUF2251 domain-containing protein -
  OLL86_RS00825 (OLL86_00825) - 172786..173262 (-) 477 WP_039092875.1 GAF domain-containing protein -
  OLL86_RS00830 (OLL86_00830) - 173355..173648 (+) 294 Protein_158 helix-turn-helix domain-containing protein -
  OLL86_RS00835 (OLL86_00835) - 173666..174343 (+) 678 WP_264780115.1 IS3 family transposase -
  OLL86_RS00840 (OLL86_00840) - 174353..174691 (+) 339 WP_080735399.1 IS3 family transposase -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 69152.12 Da        Isoelectric Point: 9.4672

>NTDB_id=683569 OLL86_RS00800 WP_264780113.1 168238..170061(+) (uvrC) [Gallibacterium anatis strain IMT49310]
MFDAKKFLADVSENPGVYRMYDRNNTVIYVGKAKNLKKRLSSYFRKNVNSKKTEALVASIDHIDTTITHSETEALLLEHN
FIKQYQPRYNVLLRDDKSYPYILLTHERHPRITSYRGAKKIAGEYFGPYPHSSAVRETLSLMQKLFPIRQCENSVYNNRS
RPCLQYQIKRCLAPCVAGYVTDEEYQQQVELARLFLQGKDQQVVTHLIEKMEQASNRLDFEAAARYRDQIQAVRSVMEKQ
FVSNDRLDDIDIIAIAYKSGLACVQVLFIRHGKILGNRSYFPKIPANTQIAEVIETFLGQFYLQAHQGRSIPDSIVIDHS
LAGKEMLQTLLSEQAGRQVQIQDKVKGEKNRYLQLAQTNASVALTTQLKQQGRIEERYQALQQLLHMDKIQRMECFDISH
TMGENTIASCVVFGSEGPLKSDYRRFNIEGTHGDDYAAMEQALKKRYDKDLTVEKIPDIIFIDGGKGQLNRALAVFDNLN
VSWNKHKPLLIGVAKGVDRKAGLETLLIGNSEREIHLEPDNLALHLIQHIRDESHNHAISGHRKKRQKAFIQSGLESIEG
VGAKRRQALLKYLGGLQGVRAATIDELASVPGISRSLAEKIFETLKH

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=683569 OLL86_RS00800 WP_264780113.1 168238..170061(+) (uvrC) [Gallibacterium anatis strain IMT49310]
ATGTTTGATGCAAAAAAATTCCTTGCCGATGTTTCGGAAAATCCGGGTGTTTATCGGATGTATGATCGGAATAACACTGT
TATTTATGTCGGCAAGGCAAAAAATCTCAAAAAACGGCTTTCCAGTTATTTCCGTAAAAATGTTAATAGCAAAAAAACGG
AAGCACTGGTAGCTTCGATCGATCATATCGATACGACGATCACCCATTCAGAAACGGAAGCATTGCTGCTTGAACATAAT
TTCATCAAGCAGTATCAGCCTCGTTATAATGTGTTGTTACGAGATGATAAATCCTATCCCTATATTTTATTAACTCACGA
GCGTCATCCACGAATTACCTCATATCGTGGTGCAAAAAAAATCGCCGGTGAGTATTTTGGGCCTTATCCGCACTCTTCCG
CTGTGCGAGAAACCTTATCATTAATGCAGAAGTTGTTCCCGATTCGTCAGTGTGAGAACAGTGTTTATAACAACCGTTCC
CGTCCTTGCTTGCAATATCAAATTAAACGCTGTTTGGCACCTTGTGTTGCCGGATATGTAACGGATGAAGAGTATCAGCA
ACAGGTGGAGTTGGCGCGCCTGTTTTTGCAAGGTAAAGATCAGCAGGTGGTGACCCATCTGATTGAAAAAATGGAGCAGG
CGAGCAATAGATTAGATTTTGAAGCAGCGGCACGTTATCGCGATCAGATTCAGGCGGTGCGATCTGTAATGGAAAAACAG
TTTGTTAGTAATGATCGTTTGGATGACATCGATATTATCGCGATTGCGTACAAATCCGGATTGGCTTGTGTGCAAGTGTT
GTTTATTCGTCACGGCAAAATATTGGGAAATCGCAGTTATTTCCCGAAAATTCCGGCAAATACACAGATTGCTGAAGTTA
TTGAAACTTTTTTAGGGCAATTTTATTTACAGGCACATCAAGGGCGGAGTATTCCCGATTCGATTGTGATTGATCACTCT
TTAGCCGGAAAAGAGATGTTACAAACGTTATTGAGTGAACAGGCAGGACGTCAAGTTCAGATTCAAGATAAAGTAAAAGG
CGAGAAAAACCGTTATTTACAGTTAGCGCAAACTAATGCTTCGGTTGCATTAACAACGCAATTAAAACAACAAGGCAGAA
TAGAAGAGCGTTATCAAGCGTTGCAACAGTTGCTGCATATGGACAAAATCCAACGAATGGAGTGTTTCGATATTAGCCAT
ACAATGGGTGAAAATACGATTGCTTCCTGTGTTGTTTTTGGTTCGGAAGGGCCGTTAAAATCGGATTACCGCCGTTTTAA
TATTGAAGGTACACACGGTGATGATTATGCGGCGATGGAGCAAGCATTGAAGAAAAGATACGATAAAGATCTCACGGTAG
AGAAGATCCCTGATATTATTTTTATTGACGGTGGCAAAGGGCAGCTCAATCGTGCTTTGGCAGTGTTTGATAATCTGAAT
GTGAGTTGGAACAAACACAAGCCGTTATTAATCGGCGTGGCGAAAGGGGTTGATCGTAAAGCCGGTTTGGAAACCTTGTT
AATCGGTAACAGTGAACGGGAGATTCATTTAGAACCGGACAATTTAGCACTGCATTTGATCCAGCATATTCGAGATGAAT
CACATAATCACGCTATTTCCGGACACCGTAAAAAACGGCAGAAAGCGTTTATTCAGAGCGGTTTGGAGAGTATTGAGGGC
GTTGGTGCAAAACGACGTCAAGCACTGTTGAAATATCTTGGCGGTTTGCAGGGGGTTCGCGCTGCTACGATAGATGAATT
GGCTTCCGTACCCGGAATTTCACGTTCATTAGCAGAAAAAATCTTTGAAACACTAAAACATTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(555-606)

GIY-YIG catalytic domain (GIY-YIG)

(15-90)

UvrB/uvrC motif (UVR)

(202-234)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(383-539)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

36.484

99.341

0.362