Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OMP51_RS29400 Genome accession   NZ_CP110190
Coordinates   6219245..6219841 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain HS204     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6214245..6224841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP51_RS29380 (OMP51_29365) aroK 6215376..6215894 (-) 519 WP_003095833.1 shikimate kinase AroK -
  OMP51_RS29385 (OMP51_29370) pilQ 6215906..6218050 (-) 2145 WP_003161249.1 type 4a pilus secretin PilQ Machinery gene
  OMP51_RS29390 (OMP51_29375) comL/pilP 6218104..6218628 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  OMP51_RS29395 (OMP51_29380) pilO 6218625..6219248 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  OMP51_RS29400 (OMP51_29385) pilN 6219245..6219841 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  OMP51_RS29405 (OMP51_29390) pilM 6219841..6220905 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  OMP51_RS29410 (OMP51_29395) - 6221090..6223561 (+) 2472 WP_280156743.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=683544 OMP51_RS29400 WP_003095839.1 6219245..6219841(-) (pilN) [Pseudomonas aeruginosa strain HS204]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=683544 OMP51_RS29400 WP_003095839.1 6219245..6219841(-) (pilN) [Pseudomonas aeruginosa strain HS204]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGTCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATTGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGTTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369