Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   OMP51_RS29390 Genome accession   NZ_CP110190
Coordinates   6218104..6218628 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain HS204     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6213104..6223628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP51_RS29375 (OMP51_29360) aroB 6214220..6215326 (-) 1107 WP_028681386.1 3-dehydroquinate synthase -
  OMP51_RS29380 (OMP51_29365) aroK 6215376..6215894 (-) 519 WP_003095833.1 shikimate kinase AroK -
  OMP51_RS29385 (OMP51_29370) pilQ 6215906..6218050 (-) 2145 WP_003161249.1 type 4a pilus secretin PilQ Machinery gene
  OMP51_RS29390 (OMP51_29375) comL/pilP 6218104..6218628 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  OMP51_RS29395 (OMP51_29380) pilO 6218625..6219248 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  OMP51_RS29400 (OMP51_29385) pilN 6219245..6219841 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  OMP51_RS29405 (OMP51_29390) pilM 6219841..6220905 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  OMP51_RS29410 (OMP51_29395) - 6221090..6223561 (+) 2472 WP_280156743.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=683542 OMP51_RS29390 WP_003095836.1 6218104..6218628(-) (comL/pilP) [Pseudomonas aeruginosa strain HS204]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=683542 OMP51_RS29390 WP_003095836.1 6218104..6218628(-) (comL/pilP) [Pseudomonas aeruginosa strain HS204]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362