Detailed information NTG0683458

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: OFY13_RS13130
• Genome accession: NZ_CP110188
• Coordinates: 2877218..2879053 (-)
• Length: 611 a.a.
• NCBI ID: WP_001918120.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain E1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2872218..2884053

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OFY13_RS13110 (OFY13_13110)	fhuA	2872294..2874393 (-)	2100	WP_001244546.1	TonB-dependent siderophore receptor FhuA	-
OFY13_RS13115 (OFY13_13115)	-	2874528..2876357 (+)	1830	WP_000488011.1	ABC transporter ATP-binding protein	-
OFY13_RS13120 (OFY13_13120)	-	2876393..2876755 (-)	363	WP_001235442.1	hypothetical protein	-
OFY13_RS13125 (OFY13_13125)	-	2876926..2877225 (-)	300	WP_000807269.1	DUF3630 family protein	-
OFY13_RS13130 (OFY13_13130)	recQ	2877218..2879053 (-)	1836	WP_001918120.1	ATP-dependent DNA helicase RecQ	Machinery gene
OFY13_RS13135 (OFY13_13135)	rarD	2879280..2880122 (+)	843	WP_001889839.1	EamA family transporter RarD	-
OFY13_RS13140 (OFY13_13140)	ggt	2880296..2882050 (+)	1755	WP_001104629.1	gamma-glutamyltransferase	-
OFY13_RS13145 (OFY13_13145)	-	2882207..2883010 (+)	804	WP_000381934.1	AraC family transcriptional regulator	-
OFY13_RS13150 (OFY13_13150)	-	2883085..2883753 (+)	669	WP_001004608.1	LysE family translocator	-

Sequence

Protein

• Length: 611 a.a.
• Molecular weight: 69128.42 Da
• Isoelectric Point: 7.1164

>NTDB_id=683458 OFY13_RS13130 WP_001918120.1 2877218..2879053(-) (recQ) [Vibrio cholerae strain E1]
MTATLMAESSALFATPERVLHEVFGYQQFRVGQQEVIEAALAGRDSLVIMPTGGGKSLCYQIPALVLEGVTLVISPLISL
MKDQVDQLKANGVAAECVNSTLAREELIAIYNRMHAGQLKLLYVSPERVLTAEFIERLSHLPLAMIAVDEAHCISQWGHD
FRPEYASLGQLKQRFPNVPVMALTATADDATRHDIMQRLQLNEPHQYLGSFDRPNIRYMLVEKHKPVSQVIRYLETQRGQ
CGIIYCGSRKKVEMLTEKLCGNHIRAASYHAGMDADERAWVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNI
ESYYQETGRAGRDGLPAEAMMLYDPADMNWLRRMLDEKPDGAQKQVESHKLTAMGAFAEAQTCRRQVLLNYFGEYRDKPC
GNCDICLDPPKRFDATEEARKALSCVYRVNQNFGIGYVVEVLRGMQNIRIREHGHDKITTYGIGRDHSHDYWVSIFRQLI
HKGMLYQNITRNSTLQLTEEARPLLRGEMNIELAVPRLDTAARAAKSDKLSGKNYDKKLFAKLRKLRKSIADDEGLPPYV
VFSDATLIDMAEIMPTSYGEMLAVNGVGQRKLEKYADPFLDLIQEHLTYHG

Nucleotide

• Length: 1836 bp

>NTDB_id=683458 OFY13_RS13130 WP_001918120.1 2877218..2879053(-) (recQ) [Vibrio cholerae strain E1]
ATGACCGCGACTTTAATGGCTGAATCTTCTGCTCTCTTTGCCACTCCTGAACGTGTTTTGCACGAGGTGTTTGGCTATCA
GCAATTTCGCGTCGGTCAGCAAGAGGTGATTGAGGCGGCGCTGGCTGGGCGTGATAGCTTGGTCATTATGCCGACTGGCG
GTGGTAAATCGCTCTGTTACCAGATCCCTGCGTTGGTGCTGGAAGGGGTCACCTTAGTGATTTCTCCCCTGATTTCGCTG
ATGAAAGATCAGGTTGACCAGCTTAAAGCCAACGGTGTGGCGGCAGAGTGCGTGAATTCCACCTTGGCGCGCGAGGAGCT
GATCGCGATTTATAACCGCATGCATGCTGGCCAGCTCAAGCTGCTGTATGTGTCGCCAGAGCGGGTATTGACCGCCGAGT
TTATCGAACGGCTCAGCCATCTGCCGTTAGCCATGATTGCGGTTGATGAAGCGCACTGTATTTCGCAATGGGGACACGAT
TTTCGTCCTGAATACGCTTCATTAGGCCAGCTTAAGCAGCGTTTCCCGAATGTGCCGGTGATGGCGCTGACGGCGACTGC
GGATGACGCGACCCGTCACGACATTATGCAGCGTTTGCAGCTCAATGAGCCGCATCAGTATCTGGGCAGCTTTGATCGCC
CGAACATTCGCTACATGCTGGTGGAAAAACATAAGCCGGTTTCGCAAGTGATTCGTTATCTGGAAACGCAGCGCGGGCAG
TGCGGCATCATCTATTGTGGCAGCCGTAAAAAAGTCGAAATGCTCACCGAAAAGCTGTGCGGCAACCACATTCGCGCCGC
CAGTTACCATGCCGGGATGGATGCCGATGAACGCGCTTGGGTGCAAGAGGCGTTTCAGCGTGATGACCTGCAAATTGTGG
TGGCGACCGTGGCGTTTGGCATGGGGATTAATAAACCCAACGTGCGCTTTGTGGTGCATTTTGATATTCCACGCAACATT
GAATCCTACTATCAGGAAACTGGCCGCGCAGGGCGTGATGGTCTGCCTGCTGAAGCCATGATGCTGTACGACCCTGCCGA
CATGAACTGGCTGCGCCGTATGCTCGATGAAAAGCCCGATGGCGCGCAAAAACAGGTCGAAAGCCACAAGCTCACCGCCA
TGGGCGCGTTTGCTGAAGCGCAAACTTGTCGCCGCCAAGTGCTGCTCAATTATTTTGGCGAATATCGCGATAAGCCGTGT
GGCAACTGCGATATCTGCCTCGATCCGCCCAAGCGTTTTGATGCCACGGAAGAGGCGCGCAAAGCGCTGTCGTGTGTCTA
TCGCGTCAACCAAAACTTCGGGATTGGCTATGTGGTGGAAGTGCTGCGCGGCATGCAAAACATCCGCATTCGCGAGCATG
GCCACGACAAAATCACCACCTACGGCATTGGCCGCGATCACAGCCACGATTACTGGGTGAGTATTTTCCGCCAACTGATT
CACAAAGGTATGCTCTACCAAAACATCACGCGTAACTCGACATTGCAACTGACCGAAGAAGCGCGCCCGCTGCTGCGCGG
TGAGATGAATATTGAGCTGGCGGTACCGCGTTTAGATACCGCGGCGCGCGCCGCGAAATCCGACAAATTGTCGGGCAAAA
ACTACGACAAAAAGCTGTTTGCCAAACTGCGTAAGCTGCGTAAATCGATCGCCGATGATGAAGGCTTACCACCGTATGTG
GTGTTCAGTGACGCCACCTTGATTGATATGGCGGAGATCATGCCGACCTCTTACGGCGAAATGTTGGCGGTGAATGGGGT
TGGGCAGCGCAAGCTGGAAAAATACGCCGACCCATTTTTGGATCTGATTCAGGAGCATTTGACCTATCATGGCTGA

Domains

Predicted by InterProScan.

• RecQ zinc-binding (RecQ_Zn_bind) (346-407)

• Helicase conserved C-terminal domain (Helicase_C) (229-333)

• HRDC domain (HRDC) (537-603)

• RQC domain (RQC) (409-517)

• DEAD/DEAH box helicase (DEAD) (33-188)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	40.641	97.054	0.394