Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   M1S45_RS17850 Genome accession   NZ_CP096724
Coordinates   3698944..3699270 (-) Length   108 a.a.
NCBI ID   WP_249374036.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 5734     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3693944..3704270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1S45_RS17830 (M1S45_17830) - 3694044..3694673 (-) 630 WP_000219967.1 FHA domain-containing protein -
  M1S45_RS17835 (M1S45_17835) gspD 3694714..3696990 (-) 2277 WP_249374035.1 type II secretion system secretin GspD -
  M1S45_RS17840 (M1S45_17840) - 3697032..3697868 (-) 837 WP_000870033.1 type II secretion system protein N -
  M1S45_RS17845 (M1S45_17845) gspN 3697868..3698611 (-) 744 WP_000730343.1 type II secretion system protein N -
  M1S45_RS17850 (M1S45_17850) hns 3698944..3699270 (-) 327 WP_249374036.1 H-NS histone family protein Regulator
  M1S45_RS17855 (M1S45_17855) - 3699465..3699905 (-) 441 WP_000661570.1 thioesterase family protein -
  M1S45_RS17860 (M1S45_17860) - 3699913..3701106 (-) 1194 WP_000681783.1 hypothetical protein -
  M1S45_RS17865 (M1S45_17865) - 3701116..3701954 (-) 839 Protein_3481 hypothetical protein -
  M1S45_RS17870 (M1S45_17870) - 3701963..3702730 (-) 768 WP_000897421.1 uroporphyrinogen-III synthase -
  M1S45_RS17875 (M1S45_17875) hemC 3702735..3703652 (-) 918 WP_031944971.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12474.17 Da        Isoelectric Point: 5.0524

>NTDB_id=683228 M1S45_RS17850 WP_249374036.1 3698944..3699270(-) (hns) [Acinetobacter baumannii strain 5734]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTIRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=683228 M1S45_RS17850 WP_249374036.1 3698944..3699270(-) (hns) [Acinetobacter baumannii strain 5734]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAATACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

99.074

100

0.991