Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   OMD12_RS09335 Genome accession   NZ_CP110117
Coordinates   1929628..1930104 (-) Length   158 a.a.
NCBI ID   WP_001186711.1    Uniprot ID   -
Organism   Escherichia coli strain 2-331     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1924628..1935104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMD12_RS09300 (OMD12_09230) istA 1925526..1927067 (+) 1542 WP_002431311.1 IS21-like element ISEc12 family transposase -
  OMD12_RS09305 (OMD12_09235) istB 1927082..1927828 (+) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -
  OMD12_RS09310 (OMD12_09240) - 1928021..1928101 (-) 81 Protein_1823 hypothetical protein -
  OMD12_RS09315 (OMD12_09245) - 1928201..1928349 (-) 149 Protein_1824 DUF5983 family protein -
  OMD12_RS09320 (OMD12_09250) - 1928346..1928723 (-) 378 WP_000854761.1 TA system toxin CbtA family protein -
  OMD12_RS09325 (OMD12_09255) - 1928813..1929181 (-) 369 WP_001295723.1 type IV toxin-antitoxin system YeeU family antitoxin -
  OMD12_RS09330 (OMD12_09260) - 1929344..1929565 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  OMD12_RS09335 (OMD12_09265) radC 1929628..1930104 (-) 477 WP_001186711.1 RadC family protein Machinery gene
  OMD12_RS09340 (OMD12_09270) - 1930119..1930592 (-) 474 WP_000855059.1 antirestriction protein -
  OMD12_RS09345 (OMD12_09275) - 1930934..1931752 (-) 819 WP_001234729.1 DUF932 domain-containing protein -
  OMD12_RS09350 (OMD12_09280) - 1931870..1932065 (-) 196 Protein_1831 DUF905 family protein -
  OMD12_RS09355 (OMD12_09285) - 1932136..1934982 (-) 2847 WP_100774593.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17603.23 Da        Isoelectric Point: 7.6151

>NTDB_id=683198 OMD12_RS09335 WP_001186711.1 1929628..1930104(-) (radC) [Escherichia coli strain 2-331]
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=683198 OMD12_RS09335 WP_001186711.1 1929628..1930104(-) (radC) [Escherichia coli strain 2-331]
ATGCAGCAGCTTTCCTTTCTGCCCGGCGCGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGGC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399