Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   OMD12_RS09245 Genome accession   NZ_CP110117
Coordinates   1915896..1917323 (-) Length   475 a.a.
NCBI ID   WP_000980615.1    Uniprot ID   -
Organism   Escherichia coli strain 2-331     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1910896..1922323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMD12_RS09215 (OMD12_09145) yeeY 1911045..1911974 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  OMD12_RS09220 (OMD12_09150) yoeI 1912189..1912251 (+) 63 WP_010723108.1 membrane protein YoeI -
  OMD12_RS09225 (OMD12_09155) plaP 1912241..1913599 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  OMD12_RS09230 (OMD12_09160) - 1913731..1914428 (+) 698 WP_103215986.1 IS1-like element IS1A family transposase -
  OMD12_RS09235 (OMD12_09165) tsuA 1914554..1915612 (+) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  OMD12_RS09240 (OMD12_09170) tsuB 1915626..1915853 (+) 228 WP_000985272.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  OMD12_RS09245 (OMD12_09175) sbcB 1915896..1917323 (-) 1428 WP_000980615.1 exodeoxyribonuclease I Machinery gene
  OMD12_RS09250 (OMD12_09180) dacD 1917532..1918698 (+) 1167 WP_001352246.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  OMD12_RS09255 (OMD12_09185) sbmC 1918817..1919290 (+) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -
  OMD12_RS09260 (OMD12_09190) yeeA 1919489..1920547 (+) 1059 WP_001200892.1 FUSC family protein -
  OMD12_RS09265 (OMD12_09195) tmaR 1920719..1921048 (+) 330 WP_000450409.1 DUF496 family protein -
  OMD12_RS09270 (OMD12_09200) - 1921149..1921514 (-) 366 WP_001282181.1 EutP/PduV family microcompartment system protein -
  OMD12_RS09275 (OMD12_09205) - 1921785..1922174 (-) 390 WP_001445118.1 IS110 family transposase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54444.71 Da        Isoelectric Point: 5.4700

>NTDB_id=683197 OMD12_RS09245 WP_000980615.1 1915896..1917323(-) (sbcB) [Escherichia coli strain 2-331]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=683197 OMD12_RS09245 WP_000980615.1 1915896..1917323(-) (sbcB) [Escherichia coli strain 2-331]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583