Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   OKW88_RS20950 Genome accession   NZ_CP110105
Coordinates   4073672..4075501 (+) Length   609 a.a.
NCBI ID   WP_167408054.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 4068672..4080501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS20915 (OKW88_20880) yjbC 4069345..4069923 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  OKW88_RS20920 (OKW88_20885) spx 4070104..4070499 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  OKW88_RS20925 (OKW88_20890) yjbE 4070542..4071198 (-) 657 WP_003232944.1 TerC family protein -
  OKW88_RS20930 (OKW88_20895) - 4071368..4071508 (+) 141 WP_119122854.1 hypothetical protein -
  OKW88_RS20935 (OKW88_20900) mecA 4071475..4072131 (+) 657 WP_003232942.1 adaptor protein MecA Regulator
  OKW88_RS20940 (OKW88_20905) - 4072126..4072247 (-) 122 Protein_4067 hypothetical protein -
  OKW88_RS20945 (OKW88_20910) coiA 4072291..4073442 (+) 1152 WP_167408053.1 competence protein CoiA Machinery gene
  OKW88_RS20950 (OKW88_20915) pepF 4073672..4075501 (+) 1830 WP_167408054.1 oligoendopeptidase F Regulator
  OKW88_RS20955 (OKW88_20920) - 4075539..4075706 (-) 168 WP_003244944.1 hypothetical protein -
  OKW88_RS20960 (OKW88_20925) spxH 4076020..4076919 (-) 900 WP_024573348.1 protease adaptor protein SpxH -
  OKW88_RS20965 (OKW88_20930) bhbI 4076916..4077314 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  OKW88_RS20970 (OKW88_20935) cwlQ 4077569..4078303 (-) 735 WP_326227900.1 bifunctional muramidase/murein lytic transglycosylase -
  OKW88_RS20975 (OKW88_20940) yjbK 4078318..4078890 (-) 573 WP_085186275.1 CYTH domain-containing protein -
  OKW88_RS20980 (OKW88_20945) - 4079015..4079383 (+) 369 WP_003232922.1 hypothetical protein -
  OKW88_RS20985 (OKW88_20950) yjbM 4079412..4080047 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70099.97 Da        Isoelectric Point: 5.1580

>NTDB_id=683160 OKW88_RS20950 WP_167408054.1 4073672..4075501(+) (pepF) [Bacillus subtilis strain CF03]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIEFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=683160 OKW88_RS20950 WP_167408054.1 4073672..4075501(+) (pepF) [Bacillus subtilis strain CF03]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAAGAATTAAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCACTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAATACATTCAGCGTGTTAAATAACGCAGATAT
AACGTTTCCGTCCATTAAAGACGAAGATGGGAATGAGAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCCACGACG
CTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTG
CGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCTGGGATG
AAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTTGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAGAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTACAGTATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGGGGAACGGTCTTCAGACAAACGATGTTCGCTGAATTTGAACATCTGATCCATACAAAGGCTCAA
GAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCTGAATAAAAAGTATTTTGGAGACGGCATGGT
GATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGAATTCCTG
AAAGCAGGAAGCTCACAATACCCGATTGATGTCTTGAAAAAAGCGGGTGTTGATATGACGTCCCCAGAGCCAATCGAAGC
CGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

97.537

0.476