Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   OKW88_RS17125 Genome accession   NZ_CP110105
Coordinates   3342121..3342555 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain CF03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3337121..3347555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS17095 (OKW88_17075) ydaD 3337768..3338628 (+) 861 WP_003246648.1 SDR family oxidoreductase -
  OKW88_RS17100 (OKW88_17080) lyxE 3338644..3339147 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  OKW88_RS17105 (OKW88_17085) ydaF 3339235..3339786 (+) 552 WP_014478866.1 GNAT family N-acetyltransferase -
  OKW88_RS17110 (OKW88_17090) ydaG 3339864..3340286 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  OKW88_RS17115 (OKW88_17095) amj 3340792..3341601 (+) 810 WP_032722918.1 lipid II flippase Amj -
  OKW88_RS17120 (OKW88_17100) ydzA 3341646..3341936 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  OKW88_RS17125 (OKW88_17105) lrpC 3342121..3342555 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  OKW88_RS17130 (OKW88_17110) topB 3342620..3344803 (+) 2184 WP_029317313.1 DNA topoisomerase III -
  OKW88_RS17135 (OKW88_17115) ephJ 3345005..3346093 (+) 1089 WP_003246551.1 lipoprotein -
  OKW88_RS17140 (OKW88_17120) epsK 3346074..3346925 (+) 852 WP_003246541.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=683131 OKW88_RS17125 WP_003246585.1 3342121..3342555(+) (lrpC) [Bacillus subtilis strain CF03]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=683131 OKW88_RS17125 WP_003246585.1 3342121..3342555(+) (lrpC) [Bacillus subtilis strain CF03]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTTAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCAGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1