Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   OKW88_RS13885 Genome accession   NZ_CP110105
Coordinates   2719792..2720481 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain CF03     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2714792..2725481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS13865 (OKW88_13840) yxeA 2715697..2716044 (-) 348 WP_003227084.1 YxeA family protein -
  OKW88_RS13870 (OKW88_13845) yxdM 2716058..2717926 (-) 1869 WP_003227080.1 ABC transporter permease YxdM -
  OKW88_RS13875 (OKW88_13850) yxdL 2717901..2718674 (-) 774 WP_131228279.1 ABC transporter ATP-binding protein YxdL -
  OKW88_RS13880 (OKW88_13855) yxdK 2718818..2719795 (-) 978 WP_086344513.1 two-component system sensor histidine kinase YxdK -
  OKW88_RS13885 (OKW88_13860) braR 2719792..2720481 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  OKW88_RS13890 (OKW88_13865) iolJ 2720589..2721461 (-) 873 WP_160831986.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  OKW88_RS13895 (OKW88_13870) iolI 2721482..2722318 (-) 837 WP_342006483.1 2-keto-myo-inositol isomerase -
  OKW88_RS13900 (OKW88_13875) iolH 2722404..2723273 (-) 870 WP_014481413.1 sugar phosphate isomerase/epimerase family protein -
  OKW88_RS13905 (OKW88_13880) iolG 2723293..2724327 (-) 1035 WP_014481414.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=683103 OKW88_RS13885 WP_003243527.1 2719792..2720481(-) (braR) [Bacillus subtilis strain CF03]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=683103 OKW88_RS13885 WP_003243527.1 2719792..2720481(-) (braR) [Bacillus subtilis strain CF03]
TTGAATAAAATTATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAACGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406