Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   OKW88_RS12350 Genome accession   NZ_CP110105
Coordinates   2417312..2418445 (-) Length   377 a.a.
NCBI ID   WP_014478242.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2412312..2423445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS12310 (OKW88_12290) ywnA 2412469..2412870 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  OKW88_RS12315 (OKW88_12295) ureC 2413005..2414714 (-) 1710 WP_407567896.1 urease subunit alpha -
  OKW88_RS12320 (OKW88_12300) ureB 2414711..2415085 (-) 375 WP_041850426.1 urease subunit beta -
  OKW88_RS12325 (OKW88_12305) ureA 2415082..2415399 (-) 318 WP_003227724.1 urease subunit gamma -
  OKW88_RS12330 (OKW88_12310) - 2415594..2415754 (-) 161 Protein_2432 hypothetical protein -
  OKW88_RS12335 (OKW88_12315) - 2415920..2416195 (-) 276 WP_342006507.1 ABC transporter -
  OKW88_RS12340 (OKW88_12320) csbD 2416416..2416604 (-) 189 WP_015251021.1 stress response protein CsbD -
  OKW88_RS12345 (OKW88_12325) - 2416677..2417156 (-) 480 WP_003244390.1 hypothetical protein -
  OKW88_RS12350 (OKW88_12330) rapC 2417312..2418445 (-) 1134 WP_014478242.1 response regulator aspartate phosphatase RapB Regulator
  OKW88_RS12355 (OKW88_12335) moaA 2418637..2419662 (-) 1026 WP_003243488.1 GTP 3',8-cyclase MoaA -
  OKW88_RS12360 (OKW88_12340) fdhD 2419678..2420466 (-) 789 WP_342006506.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  OKW88_RS12365 (OKW88_12345) - 2420700..2420861 (-) 162 WP_014478245.1 hypothetical protein -
  OKW88_RS12370 (OKW88_12350) ywmD 2420955..2421629 (-) 675 WP_003243553.1 VWA domain-containing protein -
  OKW88_RS12375 (OKW88_12355) - 2421682..2421822 (-) 141 WP_014478246.1 hypothetical protein -
  OKW88_RS12380 (OKW88_12360) ywmC 2421953..2422636 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45055.21 Da        Isoelectric Point: 4.7975

>NTDB_id=683096 OKW88_RS12350 WP_014478242.1 2417312..2418445(-) (rapC) [Bacillus subtilis strain CF03]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYKEAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=683096 OKW88_RS12350 WP_014478242.1 2417312..2418445(-) (rapC) [Bacillus subtilis strain CF03]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATCGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTGATCGGATCAGCCCTTTATAATATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTATGTATATATTGAAGAATTTGCTTTAGATGCAGCCTCTTATTTCAGTCA
TCGCGAACAATATAAAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGTT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.632

100

0.43
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424