Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   OKW88_RS11280 Genome accession   NZ_CP110105
Coordinates   2204418..2205131 (-) Length   237 a.a.
NCBI ID   WP_033883478.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2199418..2210131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS11260 (OKW88_11245) ghrB 2199562..2200539 (+) 978 WP_072557265.1 D-glycerate dehydrogenase -
  OKW88_RS11265 (OKW88_11250) psdB 2200577..2202517 (-) 1941 WP_342006528.1 lantibiotic ABC transporter permease PsdB -
  OKW88_RS11270 (OKW88_11255) psdA 2202492..2203271 (-) 780 WP_003228167.1 lantibiotic ABC transporter ATP-binding protein PsdA -
  OKW88_RS11275 (OKW88_11260) psdS 2203354..2204424 (-) 1071 WP_131228143.1 two-component sensor histidine kinase PsdS -
  OKW88_RS11280 (OKW88_11265) braR 2204418..2205131 (-) 714 WP_033883478.1 two-component system response regulator PsdR Regulator
  OKW88_RS11285 (OKW88_11270) - 2205278..2205487 (+) 210 WP_124059204.1 hypothetical protein -
  OKW88_RS11290 (OKW88_11275) yvcN 2205523..2206287 (-) 765 WP_009968228.1 arylamine N-acetyltransferase -
  OKW88_RS11295 (OKW88_11280) crh 2206288..2206545 (-) 258 WP_003219835.1 HPr family phosphocarrier protein -
  OKW88_RS11300 (OKW88_11285) whiA 2206569..2207519 (-) 951 WP_003228147.1 DNA-binding protein WhiA -
  OKW88_RS11305 (OKW88_11290) mgfK 2207542..2208495 (-) 954 WP_003244450.1 gluconeogenesis morphogenetic factor -
  OKW88_RS11310 (OKW88_11295) rapZ 2208497..2209384 (-) 888 WP_003243903.1 RNase adapter RapZ -
  OKW88_RS11315 (OKW88_11300) rppI 2209409..2209885 (-) 477 WP_010886622.1 8-oxo-dGTP diphosphatase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27502.33 Da        Isoelectric Point: 4.6062

>NTDB_id=683088 OKW88_RS11280 WP_033883478.1 2204418..2205131(-) (braR) [Bacillus subtilis strain CF03]
MYRILLVEDDERIASLLGGHLQKYGYEVKIAEQLNDIKLEFAEMKPDLVLLDINLPFFDGFYWCRQIRTISNAPIIFISA
RTDELNQVMAIENGGDDYITKPFHLEVVMAKIKSVLRRTYGEYSPSLPQESRIVELGGLTIYPDQNEAEWNSSRILFSQK
EFQLLSIFVREHKKIVSRDELLEALWDDVDFVDDNTLTVNVNRLRRKLENAGLTDCISTIRGQGYQFQVNRKDEAEC

Nucleotide


Download         Length: 714 bp        

>NTDB_id=683088 OKW88_RS11280 WP_033883478.1 2204418..2205131(-) (braR) [Bacillus subtilis strain CF03]
GTGTATCGGATTTTGCTTGTGGAAGATGATGAGCGGATTGCTTCTTTGCTGGGCGGTCATCTTCAAAAATACGGATATGA
AGTGAAAATTGCTGAACAGCTGAATGATATAAAATTGGAATTTGCAGAAATGAAGCCTGATCTTGTGCTGCTTGATATCA
ACCTGCCTTTTTTTGACGGGTTTTATTGGTGCAGGCAAATCCGTACCATTTCCAATGCGCCGATTATCTTTATATCGGCA
CGGACCGATGAGCTGAATCAGGTAATGGCGATTGAAAATGGCGGCGATGATTATATCACAAAGCCGTTCCATCTAGAGGT
AGTGATGGCCAAAATCAAAAGCGTCCTGCGCCGCACATATGGTGAATACTCGCCCTCTTTGCCGCAGGAATCTAGAATAG
TGGAGCTTGGCGGGCTGACGATTTATCCTGATCAAAATGAGGCCGAATGGAACAGCTCCCGTATTCTGTTTTCCCAAAAA
GAATTTCAGCTTCTCTCTATTTTTGTGAGGGAGCATAAAAAAATTGTCTCTCGTGATGAACTATTGGAGGCGTTATGGGA
TGACGTTGATTTTGTCGATGACAATACGTTAACGGTCAATGTCAACCGGCTGCGGAGAAAACTGGAGAATGCAGGACTGA
CAGATTGCATTTCCACAATCAGAGGACAAGGCTATCAATTTCAAGTCAATCGGAAGGATGAAGCGGAATGTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-227)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

45.536

94.515

0.43