Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   OKW88_RS08745 Genome accession   NZ_CP110105
Coordinates   1711135..1711845 (-) Length   236 a.a.
NCBI ID   WP_015714539.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1706135..1716845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS08725 (OKW88_08715) cysK 1706186..1707121 (+) 936 WP_003229237.1 cysteine synthase A -
  OKW88_RS08730 (OKW88_08720) pepV 1707155..1708546 (-) 1392 WP_014477689.1 dipeptidase PepV -
  OKW88_RS08735 (OKW88_08725) pbuO 1708643..1709941 (+) 1299 WP_131227854.1 hypoxanthine/guanine permease PbuO -
  OKW88_RS08740 (OKW88_08730) ythQ 1709981..1711138 (-) 1158 WP_131227856.1 ABC transporter permease -
  OKW88_RS08745 (OKW88_08735) pptA 1711135..1711845 (-) 711 WP_015714539.1 ABC transporter ATP-binding protein Regulator
  OKW88_RS08750 (OKW88_08740) ytzE 1712135..1712356 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  OKW88_RS08755 (OKW88_08745) rsuA 1712478..1713197 (-) 720 WP_017695479.1 pseudouridine synthase -
  OKW88_RS08760 (OKW88_08750) murJ 1713266..1714900 (-) 1635 WP_015251430.1 lipid II flippase MurJ -
  OKW88_RS08765 (OKW88_08755) ytfP 1715103..1716365 (+) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26573.65 Da        Isoelectric Point: 5.5930

>NTDB_id=683078 OKW88_RS08745 WP_015714539.1 1711135..1711845(-) (pptA) [Bacillus subtilis strain CF03]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEEREFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=683078 OKW88_RS08745 WP_015714539.1 1711135..1711845(-) (pptA) [Bacillus subtilis strain CF03]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGAGAGAGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432