Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   OKW88_RS06645 Genome accession   NZ_CP110105
Coordinates   1319383..1320558 (-) Length   391 a.a.
NCBI ID   WP_214287954.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1314383..1325558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS06615 (OKW88_06600) - 1315641..1315874 (+) 234 Protein_1318 helix-turn-helix domain-containing protein -
  OKW88_RS06620 (OKW88_06605) arsC 1316085..1316504 (-) 420 WP_029318100.1 arsenate reductase (thioredoxin) -
  OKW88_RS06625 (OKW88_06610) acr3 1316516..1317556 (-) 1041 WP_032722149.1 arsenite efflux transporter Acr3 -
  OKW88_RS06630 (OKW88_06615) - 1317579..1318019 (-) 441 WP_032722151.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  OKW88_RS06635 (OKW88_06620) arsR 1318078..1318395 (-) 318 WP_029318103.1 arsenical resistance operon transcriptional regulator ArsR -
  OKW88_RS06640 (OKW88_06625) - 1319235..1319393 (-) 159 WP_162830452.1 hypothetical protein -
  OKW88_RS06645 (OKW88_06630) rapC 1319383..1320558 (-) 1176 WP_214287954.1 tetratricopeptide repeat protein Regulator
  OKW88_RS06650 (OKW88_06635) phrE 1320927..1321061 (+) 135 WP_014114495.1 phosphatase RapE inhibitor PhrE -
  OKW88_RS06655 (OKW88_06640) - 1321196..1322047 (-) 852 WP_407568077.1 aldo/keto reductase -
  OKW88_RS06660 (OKW88_06645) - 1322219..1322662 (+) 444 WP_029318107.1 MerR family transcriptional regulator -
  OKW88_RS06665 (OKW88_06650) - 1322863..1323012 (-) 150 WP_229762698.1 hypothetical protein -
  OKW88_RS06670 (OKW88_06655) - 1323594..1325519 (+) 1926 WP_110109424.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 46342.03 Da        Isoelectric Point: 6.0936

>NTDB_id=683061 OKW88_RS06645 WP_214287954.1 1319383..1320558(-) (rapC) [Bacillus subtilis strain CF03]
MLEYYIKRHKRRGPVNPVLPSSHVGVKITEWYKMIRQFSVPDAEILKAEVEREIKQMEEDEYLLIYYSLMSFRHQLMLDY
LEPEKKYRTARPTISELLEKIEAPQKKLTGLLKYYSLFFRGMYEFDQQEFVEAINYYRKAEKELYAVTDEIEQAEFHFKV
AEAYYNMKQTHVSMHHILKALEIYDQNPLYTVRKIQSLFVIVGNYLDFKHYEKGLKHLEEALKLSKELGHDRLISSALYN
LGECYHYMGQPSKAEGYLKEAAEVAEKANLRTLPHTLHSLATVLFKQEKFNEGQKVLHQGIETAQKFNDELFLSMNKFLN
ALYIESVDKQGILNILNDLNESHMFSFTEHITLLTAEYYREGGEFEESSFFYDKMVEAQLQIQRGDCLYEY

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=683061 OKW88_RS06645 WP_214287954.1 1319383..1320558(-) (rapC) [Bacillus subtilis strain CF03]
ATGTTAGAATATTACATAAAAAGACATAAAAGGAGGGGTCCTGTGAATCCGGTTTTACCTTCCTCACATGTAGGGGTTAA
GATTACCGAATGGTATAAGATGATACGTCAGTTTAGTGTTCCGGATGCTGAAATTTTAAAAGCAGAAGTTGAAAGAGAAA
TCAAACAGATGGAAGAGGATGAGTACTTACTAATTTATTACTCCCTCATGAGCTTTCGACACCAACTTATGCTCGACTAC
TTAGAGCCAGAAAAAAAGTATAGAACAGCACGTCCAACCATCTCAGAATTACTTGAAAAAATTGAAGCTCCCCAAAAGAA
ATTAACCGGTCTCCTGAAATATTACTCATTATTTTTCCGTGGTATGTATGAATTCGATCAGCAAGAATTCGTCGAAGCTA
TTAATTATTACCGTAAAGCTGAAAAAGAACTTTATGCTGTTACTGATGAAATCGAACAAGCTGAATTTCATTTTAAAGTA
GCAGAAGCTTATTACAACATGAAACAAACTCACGTTTCCATGCACCACATTTTAAAGGCATTGGAGATTTATGATCAGAA
TCCACTGTATACTGTAAGGAAAATTCAAAGCTTGTTTGTAATCGTTGGTAACTATCTTGATTTTAAACATTATGAAAAAG
GATTGAAACATCTTGAAGAAGCTCTGAAACTTTCTAAAGAATTGGGCCACGACAGACTAATAAGTTCGGCTCTTTATAAT
TTAGGCGAATGTTATCATTACATGGGACAACCAAGTAAAGCTGAGGGATATTTGAAAGAAGCAGCTGAAGTTGCAGAAAA
AGCAAATTTAAGGACACTTCCTCATACGCTTCATTCGTTGGCCACAGTTTTATTCAAGCAAGAAAAGTTTAATGAAGGAC
AGAAGGTTTTGCATCAAGGGATCGAAACAGCACAAAAATTTAATGACGAACTTTTCTTATCGATGAATAAGTTTCTGAAT
GCTTTATATATTGAGTCAGTTGATAAACAGGGTATCCTTAATATATTGAATGATCTTAATGAAAGTCACATGTTCTCTTT
TACGGAACACATAACGTTGCTTACTGCAGAATATTATAGAGAAGGCGGAGAATTTGAAGAATCCAGTTTTTTCTACGATA
AAATGGTTGAAGCGCAGCTTCAAATTCAGCGAGGTGACTGTTTATATGAGTATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(211-267)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(19-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

43.467

95.908

0.417
  rapF Bacillus subtilis subsp. subtilis str. 168

39.947

96.675

0.386