Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   OKW88_RS05155 Genome accession   NZ_CP110105
Coordinates   1063504..1064994 (-) Length   496 a.a.
NCBI ID   WP_407568073.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1058504..1069994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS05125 (OKW88_05110) gudB 1058651..1059925 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  OKW88_RS05130 (OKW88_05115) mecB 1060081..1060665 (-) 585 WP_003230533.1 genetic competence negative regulator -
  OKW88_RS05135 (OKW88_05120) ypbG 1060824..1061603 (-) 780 WP_161476889.1 metallophosphoesterase -
  OKW88_RS05140 (OKW88_05125) ypbF 1061690..1062133 (-) 444 WP_003230531.1 YpbF family protein -
  OKW88_RS05145 (OKW88_05130) claE 1062196..1062924 (-) 729 WP_015714184.1 LysM peptidoglycan-binding domain-containing protein -
  OKW88_RS05150 (OKW88_05135) ypbD 1062875..1063477 (-) 603 WP_014477208.1 CPBP family intramembrane glutamic endopeptidase -
  OKW88_RS05155 (OKW88_05140) recS 1063504..1064994 (-) 1491 WP_407568073.1 ATP-dependent DNA helicase RecQ Machinery gene
  OKW88_RS05160 (OKW88_05145) gmmB 1064987..1066045 (-) 1059 WP_004398594.1 helix-turn-helix domain-containing protein -
  OKW88_RS05165 (OKW88_05150) fdxA 1066311..1066559 (+) 249 WP_003225461.1 ferredoxin -
  OKW88_RS05170 (OKW88_05155) fmnP 1066600..1067172 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  OKW88_RS05175 (OKW88_05160) serA 1067669..1069246 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56537.14 Da        Isoelectric Point: 6.5566

>NTDB_id=683042 OKW88_RS05155 WP_407568073.1 1063504..1064994(-) (recS) [Bacillus subtilis strain CF03]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELKHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMVPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=683042 OKW88_RS05155 WP_407568073.1 1063504..1064994(-) (recS) [Bacillus subtilis strain CF03]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGACACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGAAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCCGATGACGGAAACCTTCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGTGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994