Detailed information NTG0068304

Bioinformatically predicted

Overview

• Name: comB2
• Type: Machinery gene
• Locus tag: HPPMSS1_RS07125
• Genome accession: NZ_AP017633
• Coordinates: 1507535..1507816 (-)
• Length: 93 a.a.
• NCBI ID: WP_001272690.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain PMSS1
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1502535..1512816

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPPMSS1_RS07105 (HPATCC43504_RS07405)	-	1503264..1504604 (-)	1341	WP_162272563.1	COG3014 family protein	-
HPPMSS1_RS07115 (HPATCC43504_RS07415)	comB4	1504907..1507270 (-)	2364	WP_077231603.1	VirB4 family type IV secretion/conjugal transfer ATPase	Machinery gene
HPPMSS1_RS07120 (HPATCC43504_RS07420)	comB3	1507272..1507535 (-)	264	WP_000584956.1	hypothetical protein	Machinery gene
HPPMSS1_RS07125 (HPATCC43504_RS07425)	comB2	1507535..1507816 (-)	282	WP_001272690.1	TrbC/VirB2 family protein	Machinery gene
HPPMSS1_RS07130 (HPATCC43504_RS07430)	-	1507961..1508788 (-)	828	WP_077231602.1	DUF5718 family protein	-
HPPMSS1_RS07135 (HPATCC43504_RS07435)	-	1508876..1509928 (-)	1053	WP_077231601.1	MnmA/TRMU family protein	-
HPPMSS1_RS07140 (HPATCC43504_RS07440)	dnaG	1509925..1511604 (-)	1680	WP_077231600.1	DNA primase	-
HPPMSS1_RS07145 (HPATCC43504_RS07450)	groES	1511891..1512247 (+)	357	WP_000671925.1	co-chaperone GroES	-

Sequence

Protein

• Length: 93 a.a.
• Molecular weight: 10525.78 Da
• Isoelectric Point: 9.1450

>NTDB_id=68304 HPPMSS1_RS07125 WP_001272690.1 1507535..1507816(-) (comB2) [Helicobacter pylori strain PMSS1]
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide

• Length: 282 bp

>NTDB_id=68304 HPPMSS1_RS07125 WP_001272690.1 1507535..1507816(-) (comB2) [Helicobacter pylori strain PMSS1]
ATGTCCGCTCATTTTTTAAAAATCGTTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAGGGGTT
TTTTAACGCTCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGATGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAGGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

• TrbC/VIRB2 pilin (TrbC) (7-89)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB2	Helicobacter pylori 26695	100	100	1