Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPPMSS1_RS07120 Genome accession   NZ_AP017633
Coordinates   1507272..1507535 (-) Length   87 a.a.
NCBI ID   WP_000584956.1    Uniprot ID   -
Organism   Helicobacter pylori strain PMSS1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1502272..1512535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPPMSS1_RS07105 (HPATCC43504_RS07405) - 1503264..1504604 (-) 1341 WP_162272563.1 COG3014 family protein -
  HPPMSS1_RS07115 (HPATCC43504_RS07415) comB4 1504907..1507270 (-) 2364 WP_077231603.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPPMSS1_RS07120 (HPATCC43504_RS07420) comB3 1507272..1507535 (-) 264 WP_000584956.1 hypothetical protein Machinery gene
  HPPMSS1_RS07125 (HPATCC43504_RS07425) comB2 1507535..1507816 (-) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HPPMSS1_RS07130 (HPATCC43504_RS07430) - 1507961..1508788 (-) 828 WP_077231602.1 DUF5718 family protein -
  HPPMSS1_RS07135 (HPATCC43504_RS07435) - 1508876..1509928 (-) 1053 WP_077231601.1 MnmA/TRMU family protein -
  HPPMSS1_RS07140 (HPATCC43504_RS07440) dnaG 1509925..1511604 (-) 1680 WP_077231600.1 DNA primase -
  HPPMSS1_RS07145 (HPATCC43504_RS07450) groES 1511891..1512247 (+) 357 WP_000671925.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10006.08 Da        Isoelectric Point: 9.5290

>NTDB_id=68303 HPPMSS1_RS07120 WP_000584956.1 1507272..1507535(-) (comB3) [Helicobacter pylori strain PMSS1]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=68303 HPPMSS1_RS07120 WP_000584956.1 1507272..1507535(-) (comB3) [Helicobacter pylori strain PMSS1]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGCGCCTTTTATCTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

100

100

1

Multiple sequence alignment