Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   OKW88_RS02825 Genome accession   NZ_CP110105
Coordinates   564072..564503 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain CF03     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 559072..569503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS02805 (OKW88_02805) spoVS 559633..559893 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  OKW88_RS02810 (OKW88_02810) tdh 560159..561202 (+) 1044 WP_342006622.1 L-threonine 3-dehydrogenase -
  OKW88_RS02815 (OKW88_02815) kbl 561215..562393 (+) 1179 WP_041336018.1 glycine C-acetyltransferase -
  OKW88_RS02820 (OKW88_02820) miaB 562541..564070 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  OKW88_RS02825 (OKW88_02825) ymcA 564072..564503 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  OKW88_RS02830 (OKW88_02830) cotE 564757..565302 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  OKW88_RS02835 (OKW88_02835) hexA 565435..568011 (+) 2577 WP_049140041.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=683032 OKW88_RS02825 WP_003231834.1 564072..564503(+) (ymcA) [Bacillus subtilis strain CF03]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=683032 OKW88_RS02825 WP_003231834.1 564072..564503(+) (ymcA) [Bacillus subtilis strain CF03]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1