Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   OKW88_RS00425 Genome accession   NZ_CP110105
Coordinates   78063..79199 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain CF03     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 73063..84199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW88_RS00405 (OKW88_00405) uxaA 73514..75007 (+) 1494 WP_407568043.1 UxaA family hydrolase -
  OKW88_RS00410 (OKW88_00410) yjnA 75046..75810 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  OKW88_RS00415 (OKW88_00415) bstD 76033..76497 (-) 465 WP_014479541.1 DinB family protein -
  OKW88_RS00420 (OKW88_00420) yjoB 76646..77917 (+) 1272 WP_003245490.1 ATPase YjoB -
  OKW88_RS00425 (OKW88_00425) rapC 78063..79199 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  OKW88_RS00430 (OKW88_00430) phrA 79189..79323 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  OKW88_RS00435 (OKW88_00435) yjpA 79354..79611 (-) 258 WP_003232731.1 YciI family protein -
  OKW88_RS00440 (OKW88_00440) xlyB 79732..80685 (+) 954 WP_015252290.1 N-acetylmuramoyl-L-alanine amidase -
  OKW88_RS00445 (OKW88_00445) yjqA 80725..81102 (-) 378 WP_014479546.1 PH domain-containing protein -
  OKW88_RS00450 (OKW88_00450) pghB 81207..81809 (+) 603 WP_015252289.1 poly-gamma-glutamate hydrolase family protein -
  OKW88_RS00455 (OKW88_00455) xpdC 81886..82722 (+) 837 WP_131227335.1 manganese catalase family protein -
  OKW88_RS00460 (OKW88_00460) xkdA 82766..83362 (-) 597 WP_024572596.1 ImmA/IrrE family metallo-endopeptidase -
  OKW88_RS00465 (OKW88_00465) xre 83525..83866 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=683010 OKW88_RS00425 WP_015252291.1 78063..79199(+) (rapC) [Bacillus subtilis strain CF03]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=683010 OKW88_RS00425 WP_015252291.1 78063..79199(+) (rapC) [Bacillus subtilis strain CF03]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTGGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTGTATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418