Detailed information NTG0682995

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OIM89_RS22135
• Genome accession: NZ_CP110079
• Coordinates: 4964913..4965986 (-)
• Length: 357 a.a.
• NCBI ID: WP_030696310.1
• Uniprot ID: A0A7Y6F220
• Organism: Streptomyces sp. BI87
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4959913..4970986

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OIM89_RS22120 (OIM89_22120)	rcrP	4960937..4962670 (+)	1734	WP_047465456.1	ABC transporter ATP-binding protein	Regulator
OIM89_RS22125 (OIM89_22125)	rcrQ	4962670..4964586 (+)	1917	WP_264491571.1	ABC transporter ATP-binding protein	Regulator
OIM89_RS22130 (OIM89_22130)	-	4964621..4964893 (+)	273	WP_217685048.1	hypothetical protein	-
OIM89_RS22135 (OIM89_22135)	rpoS	4964913..4965986 (-)	1074	WP_030696310.1	RNA polymerase sigma factor	Regulator
OIM89_RS22140 (OIM89_22140)	dnaG	4966166..4968070 (-)	1905	WP_030696311.1	DNA primase	-
OIM89_RS22145 (OIM89_22145)	-	4968191..4969453 (-)	1263	WP_030696312.1	NAD(P)/FAD-dependent oxidoreductase	-

Sequence

Protein

• Length: 357 a.a.
• Molecular weight: 38771.30 Da
• Isoelectric Point: 10.3517

>NTDB_id=682995 OIM89_RS22135 WP_030696310.1 4964913..4965986(-) (rpoS) [Streptomyces sp. BI87]
MQTRPPRSAPTAPPAVLAPAVPTPRRSPQRAPAGGAGTGPQGAGGRTPAGSEQAGAAAPDLFRQYLREIGRIPLLSAADE
VELARRVEAGVFAAAKLAGGSADPALAHDLRRLVALGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRA
VEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRALLQEAGREPAAEEVGERLGLSGEKVE
EVLRLAREPISLHAPVGGEDDVFLGDLIEDADAASPAESAALLLLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEE
IGRLFGVTRERIRQIESKTLRRLREHTAAGQLRGYLE

Nucleotide

• Length: 1074 bp

>NTDB_id=682995 OIM89_RS22135 WP_030696310.1 4964913..4965986(-) (rpoS) [Streptomyces sp. BI87]
GTGCAGACCAGGCCCCCTCGCTCCGCCCCCACCGCCCCGCCCGCGGTCCTCGCCCCGGCCGTGCCCACCCCGCGCAGGTC
GCCCCAGCGGGCCCCGGCCGGCGGAGCCGGGACCGGGCCGCAGGGCGCGGGCGGGCGGACGCCGGCCGGTTCCGAGCAGG
CCGGGGCGGCCGCCCCCGACCTCTTCCGGCAGTACCTCCGGGAGATCGGGCGCATCCCGCTGCTCTCCGCCGCCGACGAG
GTGGAGCTGGCCCGGCGCGTGGAGGCGGGCGTGTTCGCCGCCGCGAAACTGGCCGGGGGCTCGGCGGACCCGGCGCTCGC
CCACGACCTGCGGCGGCTGGTGGCCCTCGGGGAGCGGGCCAAGGGACGGCTCATCGAGGCCAACCTCAGGCTCGTCGTCT
CGGTGGCCAAGCGGTACACGGGCCGCGGCCTGACCATGCTCGACCTGGTGCAGGAGGGCAACCTCGGACTGATCCGCGCG
GTGGAGAAGTTCGACTACACGCGGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATACGCCAGGCGATGTCCCGCGC
CCTCGCCGACCAGGCCCGCACCATCCGGGTGCCGGTGCACGTCGTGGAGCTGATCAACCGGGTCGTCCGCACCCAGCGCG
CCCTGCTCCAGGAGGCGGGCCGCGAGCCGGCCGCCGAGGAGGTCGGCGAGCGGCTCGGGCTGAGTGGCGAGAAGGTCGAG
GAGGTGCTGCGGCTGGCCCGCGAACCCATCTCCCTGCACGCGCCGGTCGGCGGCGAGGACGACGTCTTCCTCGGCGACCT
CATCGAGGACGCCGACGCGGCCTCCCCCGCCGAGAGCGCCGCCCTGCTCCTGCTCCGCCAGCACCTCGACGCGGTCCTCG
CCACCCTCGGCGACCGCGAACGCCAGGTGGTGCAGTTGCGGTACGGGTTCGACGACGGGCGGCCGCGCACCCTGGAGGAG
ATCGGCCGGCTCTTCGGGGTCACCCGCGAACGGATCCGCCAGATCGAGTCGAAGACCCTGCGCCGGCTCCGCGAGCACAC
GGCGGCGGGGCAGTTGCGGGGCTACCTGGAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (60-93)

• Sigma-70, region 4 (Sigma70_r4) (292-345)

• Sigma-70 region 2 (Sigma70_r2) (124-193)

• Sigma-70 region 3 (Sigma70_r3) (203-279)

3D structure

• AlphaFold DB: A0A7Y6F220

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	44.521	81.793	0.364