Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OIM89_RS11320 Genome accession   NZ_CP110079
Coordinates   2630679..2631677 (-) Length   332 a.a.
NCBI ID   WP_003950213.1    Uniprot ID   A0ABR4S5E1
Organism   Streptomyces sp. BI87     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2625679..2636677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIM89_RS11305 (OIM89_11305) - 2626322..2627539 (-) 1218 WP_037846392.1 IS110-like element ISSgr1 family transposase -
  OIM89_RS11310 (OIM89_11310) - 2627918..2629129 (+) 1212 WP_247860371.1 P1 family peptidase -
  OIM89_RS11315 (OIM89_11315) - 2629551..2630303 (+) 753 WP_030697803.1 DUF6227 family protein -
  OIM89_RS11320 (OIM89_11320) rpoS 2630679..2631677 (-) 999 WP_003950213.1 RNA polymerase sigma factor RpoD/SigA Regulator
  OIM89_RS11325 (OIM89_11325) - 2631851..2632411 (+) 561 WP_030697804.1 GNAT family N-acetyltransferase -
  OIM89_RS11330 (OIM89_11330) - 2632416..2633198 (-) 783 WP_264491218.1 dioxygenase -
  OIM89_RS11335 (OIM89_11335) - 2633309..2633827 (+) 519 WP_030697806.1 MarR family winged helix-turn-helix transcriptional regulator -
  OIM89_RS11340 (OIM89_11340) - 2633852..2635417 (-) 1566 WP_264491219.1 MFS transporter -
  OIM89_RS11345 (OIM89_11345) - 2635580..2636227 (-) 648 WP_047468015.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36769.27 Da        Isoelectric Point: 4.6701

>NTDB_id=682973 OIM89_RS11320 WP_003950213.1 2630679..2631677(-) (rpoS) [Streptomyces sp. BI87]
MATRAVARRQPAASGETGAAGSVRATGEIADRDLVGMYLDEIARTPLLDAAKEVELSQTIEAGVYAGKILDGEVDSDSAG
ASREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAI
TRSIADQSRTIRLPVHLVEELGRIRRVQREFNRENGRDPEPAEIAAELSSTPERVTDVLDWARDPVSLNMSVDDEGETQF
GDLLEDTSAVSPEQSVLTLLRSEELDDLIGQLDDRTASIIKMRYGIEDGRERTLTEVGKQHGLTRERIRQIEKHALLELK
RMAHDTGFDAAA

Nucleotide


Download         Length: 999 bp        

>NTDB_id=682973 OIM89_RS11320 WP_003950213.1 2630679..2631677(-) (rpoS) [Streptomyces sp. BI87]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGCCCGCCGCCTCCGGCGAGACCGGCGCGGCAGGCAGCGTCCGCGCGACCGG
CGAGATCGCCGACCGCGACCTTGTGGGCATGTATCTCGACGAGATCGCCCGCACACCGCTGCTGGACGCCGCGAAGGAAG
TGGAGCTGTCCCAGACCATCGAGGCCGGCGTCTACGCCGGGAAGATCCTCGACGGCGAGGTCGACAGCGACTCCGCCGGA
GCTTCCCGCGAGGAGCTGGAAGCCCTCGTCGCCGAGGGGGAGCGGGCCAAGGACGTCTTCATCCGGTCCAACCTCCGCCT
CGTCGTCGCCGTGGCCCGCCGCTACCCACGCAGCGGCCTCCCCCTGCTCGACCTCATCCAGGAGGGGAACGCCGGCCTGG
TCCGCGCCGTCGAGAAGTTCGACTACGCCAAGGGCTTCAAGTTCTCCACCTACGCCACCTGGTGGATCAGGCAGGCCATC
ACCCGCTCCATCGCCGACCAGTCGCGCACCATCCGGCTCCCCGTCCACCTCGTGGAGGAGCTGGGCCGCATCCGCCGTGT
CCAGCGCGAGTTCAACCGCGAGAACGGCCGGGACCCCGAGCCCGCCGAGATCGCGGCCGAGCTGAGCAGCACCCCCGAGC
GCGTCACCGACGTCCTCGACTGGGCCCGCGACCCGGTCTCGCTCAACATGTCGGTGGACGACGAGGGCGAGACCCAGTTC
GGCGACCTCCTGGAGGACACCTCCGCGGTCTCCCCCGAGCAGTCCGTCCTCACCCTGCTGCGCAGCGAGGAGCTCGACGA
CCTCATCGGCCAGCTCGACGACCGCACCGCCTCCATCATCAAGATGCGGTACGGCATCGAGGACGGCCGCGAGCGCACCC
TCACCGAGGTCGGCAAGCAGCACGGCCTGACCCGCGAGCGCATCCGCCAGATAGAGAAGCACGCGCTCCTGGAACTCAAG
CGCATGGCGCACGACACCGGATTCGACGCAGCGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-255)

Sigma-70 region 2 (Sigma70_r2)

(100-169)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(33-66)

Sigma-70, region 4 (Sigma70_r4)

(269-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

38.17

95.482

0.364