Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OIM89_RS05660 Genome accession   NZ_CP110079
Coordinates   1330699..1331484 (+) Length   261 a.a.
NCBI ID   WP_003951282.1    Uniprot ID   A0ABR4S5N7
Organism   Streptomyces sp. BI87     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1325699..1336484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIM89_RS05650 (OIM89_05650) - 1326550..1329420 (-) 2871 WP_030698770.1 vitamin B12-dependent ribonucleotide reductase -
  OIM89_RS05655 (OIM89_05655) nrdR 1329567..1330079 (-) 513 WP_030698769.1 transcriptional regulator NrdR -
  OIM89_RS05660 (OIM89_05660) dinR/lexA 1330699..1331484 (+) 786 WP_003951282.1 transcriptional repressor LexA Regulator
  OIM89_RS05665 (OIM89_05665) - 1331571..1333559 (-) 1989 WP_030698768.1 ATP-dependent DNA helicase -
  OIM89_RS05670 (OIM89_05670) - 1333638..1335500 (-) 1863 WP_264491047.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28190.95 Da        Isoelectric Point: 8.9090

>NTDB_id=682955 OIM89_RS05660 WP_003951282.1 1330699..1331484(+) (dinR/lexA) [Streptomyces sp. BI87]
MTTTADSATITAQGRSQGRRESVHAMNEPASPQEGAKPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSAQPADTTGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDNHIWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=682955 OIM89_RS05660 WP_003951282.1 1330699..1331484(+) (dinR/lexA) [Streptomyces sp. BI87]
GTGACCACGACCGCAGACAGCGCCACCATCACCGCCCAGGGCCGGTCCCAGGGACGACGGGAGTCGGTGCACGCCATGAA
TGAGCCCGCCTCGCCCCAGGAGGGAGCGAAGCCCGCCCGCTCGCTCCCCGGACGACCTCCGGGCATCCGCGCGGACAGCT
CAGGACTGACCGACCGGCAGCGCCGCGTGATCGAGGTCATCCGCGACTCGGTGCAGCGTCGCGGCTACCCGCCGTCGATG
CGGGAGATCGGGCAGGCCGTCGGCCTCTCCAGCACCTCCTCGGTGGCCCACCAGCTGATGGCCCTGGAGCGCAAGGGCTT
CCTCCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTGCGCGGCTCGGACCAGCCGAGCGCGCAGCCCGCGGACACCA
CGGGCAAGCCCGCCGCCTCCTACGTGCCGCTGGTCGGCCGGATCGCGGCCGGCGGGCCGATCCTCGCCGAGGAGTCGGTC
GAGGACGTCTTCCCCCTCCCCCGCCAGCTGGTCGGCGACGGTGAGCTCTTCGTCCTCAAGGTCGTCGGTGACTCCATGAT
CGAGGCGGCCATCTGCGACGGCGACTGGGTCACCGTCCGCCGCCAGCCCGTCGCCGAGAACGGCGACATCGTCGCCGCGA
TGCTGGACGGCGAGGCCACCGTGAAGCGGTTCAAGCGCGAGGACAACCACATCTGGCTCCTCCCGCACAACGCGGCCTAC
CAGCCGATCCCCGGCGACGAGGCCACCATCCTCGGCAAGGTCGTCGCGGTCCTGCGGCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

81.226

0.379