Detailed information NTG0682906

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OLR78_RS14630
• Genome accession: NZ_CP110018
• Coordinates: 2958472..2959464 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain DH10B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2953472..2964464

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OLR78_RS14610 (OLR78_14555)	otnK	2954248..2955414 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
OLR78_RS14615 (OLR78_14560)	ygbL	2955506..2956144 (+)	639	WP_001278991.1	aldolase	-
OLR78_RS14620 (OLR78_14565)	ygbM	2956149..2956925 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
OLR78_RS14625 (OLR78_14570)	ygbN	2957014..2958378 (+)	1365	WP_000104441.1	GntP family transporter	-
OLR78_RS14630 (OLR78_14575)	rpoS	2958472..2959464 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
OLR78_RS14635 (OLR78_14580)	nlpD	2959527..2960621 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
OLR78_RS14640 (OLR78_14585)	pcm	2960806..2961432 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OLR78_RS14645 (OLR78_14590)	surE	2961426..2962187 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OLR78_RS14650 (OLR78_14595)	truD	2962168..2963217 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
OLR78_RS14655 (OLR78_14600)	ispF	2963214..2963693 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OLR78_RS14660 (OLR78_14605)	ispD	2963693..2964403 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=682906 OLR78_RS14630 WP_000081588.1 2958472..2959464(-) (rpoS) [Escherichia coli strain DH10B]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=682906 OLR78_RS14630 WP_000081588.1 2958472..2959464(-) (rpoS) [Escherichia coli strain DH10B]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715