Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/comE3   Type   Machinery gene
Locus tag   HPATCC43504_RS07660 Genome accession   NZ_AP017632
Coordinates   1600656..1601969 (-) Length   437 a.a.
NCBI ID   WP_162296894.1    Uniprot ID   -
Organism   Helicobacter pylori strain ATCC 43504     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1595656..1606969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPATCC43504_RS07630 (HPATCC43504_01529) nadC 1596119..1596940 (-) 822 WP_108169340.1 carboxylating nicotinate-nucleotide diphosphorylase -
  HPATCC43504_RS07635 (HPATCC43504_01530) nadA 1596940..1597950 (-) 1011 WP_108169341.1 quinolinate synthase NadA -
  HPATCC43504_RS07640 (HPATCC43504_01531) - 1597940..1598743 (-) 804 WP_108169342.1 phosphatidylserine decarboxylase -
  HPATCC43504_RS07645 (HPATCC43504_01532) - 1598737..1599243 (-) 507 WP_000953109.1 hypothetical protein -
  HPATCC43504_RS07650 (HPATCC43504_01533) - 1599256..1599750 (-) 495 WP_015643723.1 hypothetical protein -
  HPATCC43504_RS07655 (HPATCC43504_01534) mqnP 1599743..1600585 (-) 843 WP_231952840.1 menaquinone biosynthesis prenyltransferase MqnP -
  HPATCC43504_RS07660 (HPATCC43504_01535) comEC/comE3 1600656..1601969 (-) 1314 WP_162296894.1 ComEC/Rec2 family competence protein Machinery gene
  HPATCC43504_RS07665 (HPATCC43504_01536) - 1601966..1603432 (-) 1467 WP_108169345.1 replicative DNA helicase -
  HPATCC43504_RS07670 (HPATCC43504_01537) - 1603443..1604843 (-) 1401 WP_108169346.1 NAD(P)H-hydrate dehydratase -
  HPATCC43504_RS07675 (HPATCC43504_01538) crdS 1604846..1606048 (-) 1203 WP_108169347.1 copper-sensing histidine kinase CrdS -
  HPATCC43504_RS07680 (HPATCC43504_01539) crdR 1606014..1606655 (-) 642 WP_001169788.1 copper response regulator transcription factor CrdR -

Sequence

Protein


Download         Length: 437 a.a.        Molecular weight: 50372.33 Da        Isoelectric Point: 9.9128

>NTDB_id=68284 HPATCC43504_RS07660 WP_162296894.1 1600656..1601969(-) (comEC/comE3) [Helicobacter pylori strain ATCC 43504]
MKDKTFQGAFELLTTPKEYLWCGVFLSLLLAINLYLEYLNYQKLDFSKPTSLNAQILLQYPKTKDQKTYFVLKLQSKGMI
FYTIIKEPLKNLQYRHAQFFGKFKPCSFLESLRSCFFQTYSFSLTRKQDFKSHWRHFIDSTHSSALVGNLYRALFIGDSL
NKDLRDRANALGINHLLAISGFHLGILSVSVYFLFSLFYTPLQKRYFPYRNAFYDIGVLVWVFLLGYLLLLDFLPSFFRA
FLMGLLGFLACFFGVRLLSFKLLILACCIAIALLPKLLFSVGFLLSVCGVWYIFLFLKHTQIFFKTSSFLRRSFQAISLS
ALVFLNMLIVAHAFFPMFSPYQLFSIPLGLIFIVFFPLSLFLHAVGLGSLLDNILGMPLTIPTISIPSPLWLLGVHLFLT
ILSARFFKVYLSMNVLSAGFFLYCCYQYIIMPSLIVG

Nucleotide


Download         Length: 1314 bp        

>NTDB_id=68284 HPATCC43504_RS07660 WP_162296894.1 1600656..1601969(-) (comEC/comE3) [Helicobacter pylori strain ATCC 43504]
TTGAAAGACAAAACTTTTCAGGGGGCGTTTGAACTTCTTACAACCCCCAAAGAATACTTATGGTGTGGGGTGTTTTTAAG
CCTTTTGTTGGCGATTAACCTTTATTTAGAATACTTGAATTACCAAAAGCTTGATTTTTCAAAACCTACAAGCTTGAACG
CTCAAATCTTATTACAATACCCTAAAACGAAAGATCAAAAAACCTATTTTGTCTTAAAGCTCCAATCAAAGGGCATGATC
TTTTACACCATTATTAAAGAGCCTTTAAAGAACCTCCAATACCGCCATGCGCAATTTTTTGGCAAGTTCAAACCTTGCTC
GTTTTTGGAGTCTTTAAGATCATGCTTTTTTCAAACCTATTCTTTTTCTTTAACGCGAAAACAGGATTTCAAATCGCATT
GGCGCCATTTCATTGACAGCACTCATTCAAGCGCTTTAGTGGGCAATTTGTATCGCGCGTTATTTATAGGGGATAGCTTG
AATAAGGATTTAAGAGACAGGGCTAACGCGCTAGGGATCAACCACTTACTAGCCATTAGCGGGTTCCATTTAGGGATTTT
GAGCGTTAGCGTGTATTTTCTTTTCTCTCTTTTTTATACCCCCTTACAAAAACGCTATTTCCCTTATAGGAACGCTTTTT
ATGATATAGGGGTTTTGGTGTGGGTTTTTTTGCTAGGGTATTTGTTGCTACTAGATTTTTTACCCTCTTTTTTCAGGGCG
TTTTTAATGGGCTTATTAGGGTTTTTGGCATGCTTTTTTGGGGTAAGGCTTTTGAGTTTTAAACTTTTGATTTTAGCGTG
CTGTATCGCCATAGCGTTACTCCCTAAATTGCTTTTTAGCGTGGGGTTTTTGCTTTCTGTTTGTGGGGTGTGGTATATCT
TTTTATTCTTAAAACACACTCAAATTTTTTTTAAAACCTCTTCTTTTTTAAGGCGATCTTTTCAAGCCATAAGCTTAAGC
GCGCTGGTGTTTTTGAACATGCTCATTGTTGCGCATGCCTTTTTCCCTATGTTTTCGCCCTATCAGCTCTTTAGCATTCC
TTTAGGCTTGATTTTTATCGTGTTTTTCCCTTTGAGTTTGTTCTTGCATGCGGTGGGTTTAGGGTCTTTATTGGATAATA
TTCTAGGCATGCCTTTAACCATCCCTACGATTTCAATCCCTTCGCCTTTATGGCTTTTAGGGGTGCATTTATTTTTAACG
ATTTTAAGCGCGCGTTTTTTTAAGGTTTATTTGAGCATGAATGTTTTGAGTGCGGGCTTTTTCTTGTATTGTTGCTATCA
ATATATTATAATGCCTAGCTTAATTGTAGGTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(159-371)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/comE3 Helicobacter pylori 26695

96.11

100

0.961

Multiple sequence alignment