Detailed information NTG0682824

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OLR76_RS14630
• Genome accession: NZ_CP110017
• Coordinates: 2958466..2959458 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081588.1
• Uniprot ID: Q540P0
• Organism: Escherichia coli strain HE_50
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2953466..2964458

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OLR76_RS14610 (OLR76_14555)	otnK	2954242..2955408 (+)	1167	WP_001393459.1	3-oxo-tetronate kinase	-
OLR76_RS14615 (OLR76_14560)	ygbL	2955500..2956138 (+)	639	WP_001278991.1	aldolase	-
OLR76_RS14620 (OLR76_14565)	ygbM	2956143..2956919 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
OLR76_RS14625 (OLR76_14570)	ygbN	2957008..2958372 (+)	1365	WP_241220948.1	GntP family transporter	-
OLR76_RS14630 (OLR76_14575)	rpoS	2958466..2959458 (-)	993	WP_000081588.1	RNA polymerase sigma factor RpoS	Regulator
OLR76_RS14635 (OLR76_14580)	nlpD	2959521..2960615 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
OLR76_RS14640 (OLR76_14585)	pcm	2960800..2961426 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OLR76_RS14645 (OLR76_14590)	surE	2961420..2962181 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OLR76_RS14650 (OLR76_14595)	truD	2962162..2963211 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
OLR76_RS14655 (OLR76_14600)	ispF	2963208..2963687 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OLR76_RS14660 (OLR76_14605)	ispD	2963687..2964397 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37971.86 Da
• Isoelectric Point: 4.5886

>NTDB_id=682824 OLR76_RS14630 WP_000081588.1 2958466..2959458(-) (rpoS) [Escherichia coli strain HE_50]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEQEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=682824 OLR76_RS14630 WP_000081588.1 2958466..2959458(-) (rpoS) [Escherichia coli strain HE_50]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAACAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

3D structure

• AlphaFold DB: Q540P0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715