Detailed information NTG0682777

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OI124_RS23170
• Genome accession: NZ_CP109953
• Coordinates: 4763217..4764209 (+)
• Length: 330 a.a.
• NCBI ID: WP_048943255.1
• Uniprot ID: -
• Organism: Escherichia coli strain NC22
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4758217..4769209

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OI124_RS23140 (OI124_23060)	ispD	4758278..4758988 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OI124_RS23145 (OI124_23065)	ispF	4758988..4759467 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OI124_RS23150 (OI124_23070)	truD	4759464..4760513 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
OI124_RS23155 (OI124_23075)	surE	4760494..4761255 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OI124_RS23160 (OI124_23080)	pcm	4761249..4761875 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OI124_RS23165 (OI124_23085)	nlpD	4762060..4763154 (+)	1095	WP_347405460.1	murein hydrolase activator NlpD	-
OI124_RS23170 (OI124_23090)	rpoS	4763217..4764209 (+)	993	WP_048943255.1	RNA polymerase sigma factor RpoS	Regulator
OI124_RS23175 (OI124_23095)	ygbN	4764303..4765667 (-)	1365	WP_000104456.1	GntP family transporter	-
OI124_RS23180 (OI124_23100)	ygbM	4765756..4766532 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
OI124_RS23185 (OI124_23105)	ygbL	4766537..4767175 (-)	639	WP_001278994.1	aldolase	-
OI124_RS23190 (OI124_23110)	otnK	4767172..4768434 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38002.87 Da
• Isoelectric Point: 4.5597

>NTDB_id=682777 OI124_RS23170 WP_048943255.1 4763217..4764209(+) (rpoS) [Escherichia coli strain NC22]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEATTLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=682777 OI124_RS23170 WP_048943255.1 4763217..4764209(+) (rpoS) [Escherichia coli strain NC22]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGACAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (262-315)

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715