Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB3   Type   Machinery gene
Locus tag   HPATCC43504_RS01040 Genome accession   NZ_AP017632
Coordinates   221407..221670 (+) Length   87 a.a.
NCBI ID   WP_108169542.1    Uniprot ID   -
Organism   Helicobacter pylori strain ATCC 43504     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 216407..226670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPATCC43504_RS01015 (HPATCC43504_00206) groES 216701..217057 (-) 357 WP_000671927.1 co-chaperone GroES -
  HPATCC43504_RS01020 (HPATCC43504_00207) dnaG 217335..219014 (+) 1680 WP_108169539.1 DNA primase -
  HPATCC43504_RS01025 (HPATCC43504_00208) - 219011..220063 (+) 1053 WP_108169540.1 MnmA/TRMU family protein -
  HPATCC43504_RS01030 (HPATCC43504_00209) - 220153..220980 (+) 828 WP_108169541.1 DUF5718 family protein -
  HPATCC43504_RS01035 (HPATCC43504_00210) comB2 221126..221407 (+) 282 WP_001272690.1 TrbC/VirB2 family protein Machinery gene
  HPATCC43504_RS01040 (HPATCC43504_00211) comB3 221407..221670 (+) 264 WP_108169542.1 competence protein ComB Machinery gene
  HPATCC43504_RS01045 (HPATCC43504_00212) comB4 221672..224035 (+) 2364 WP_108169543.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPATCC43504_RS01055 (HPATCC43504_00213) - 224354..225694 (+) 1341 WP_162296840.1 COG3014 family protein -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 10068.15 Da        Isoelectric Point: 9.5290

>NTDB_id=68269 HPATCC43504_RS01040 WP_108169542.1 221407..221670(+) (comB3) [Helicobacter pylori strain ATCC 43504]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLAFFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA

Nucleotide


Download         Length: 264 bp        

>NTDB_id=68269 HPATCC43504_RS01040 WP_108169542.1 221407..221670(+) (comB3) [Helicobacter pylori strain ATCC 43504]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTATGGCTGAACGCTAAATC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTATTGAGTGCTTTTTTATTGTATTTAGGGT
TTTTAGCGTTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACCAAATGTTATAGAGCGTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB3 Helicobacter pylori 26695

97.701

100

0.977

Multiple sequence alignment