Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OHM48_RS07805 Genome accession   NZ_CP109942
Coordinates   1565749..1567410 (-) Length   553 a.a.
NCBI ID   WP_029174766.1    Uniprot ID   -
Organism   Streptococcus suis strain ID35541     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1560749..1572410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM48_RS07780 (OHM48_07780) - 1562191..1562658 (-) 468 WP_105155712.1 GNAT family N-acetyltransferase -
  OHM48_RS07785 (OHM48_07785) - 1563063..1563338 (-) 276 WP_044767299.1 HU family DNA-binding protein -
  OHM48_RS07790 (OHM48_07790) - 1563428..1564024 (-) 597 WP_105155713.1 YpmS family protein -
  OHM48_RS07795 (OHM48_07795) - 1563996..1564829 (-) 834 WP_105155714.1 SGNH/GDSL hydrolase family protein -
  OHM48_RS07800 (OHM48_07800) - 1564822..1565655 (-) 834 WP_002936253.1 DegV family protein -
  OHM48_RS07805 (OHM48_07805) recN 1565749..1567410 (-) 1662 WP_029174766.1 DNA repair protein RecN Machinery gene
  OHM48_RS07810 (OHM48_07810) - 1567413..1567838 (-) 426 WP_002942941.1 arginine repressor -
  OHM48_RS07815 (OHM48_07815) - 1567831..1568652 (-) 822 WP_105155715.1 TlyA family RNA methyltransferase -
  OHM48_RS07820 (OHM48_07820) - 1568645..1569517 (-) 873 WP_024398994.1 polyprenyl synthetase family protein -
  OHM48_RS07825 (OHM48_07825) - 1569517..1569732 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  OHM48_RS07830 (OHM48_07830) xseA 1569707..1571050 (-) 1344 WP_105155716.1 exodeoxyribonuclease VII large subunit -
  OHM48_RS07835 (OHM48_07835) - 1571217..1572125 (+) 909 WP_264490792.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62743.93 Da        Isoelectric Point: 4.6542

>NTDB_id=682679 OHM48_RS07805 WP_029174766.1 1565749..1567410(-) (recN) [Streptococcus suis strain ID35541]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLLQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELALVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=682679 OHM48_RS07805 WP_029174766.1 1565749..1567410(-) (recN) [Streptococcus suis strain ID35541]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAATGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTTTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATTCGTCGTGAAATCCTACAAAATGGCCGTTCGGTCAGTCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGGAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGCTAGAATACCAAATTGCTGAAATCGAAGCAGCAGATTTGAAGTCTGGCGAAGATATTCAACTCAATC
AGGAACGCGATAAACTGCTCAACCACAAACAAATAGCGGATACCTTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCTTGCAATTGGAAAGTCGCCTGGATTTGCTCAATACCATTACGAAGAAATATGGCGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGCGAAGAATATAATCTATTGACAGGCAATGATTTATCTGGAGATGATTT
GGAAGTGCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTC
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTAGAATTTTACATCTCCACCAATCCTGGCGAAGACTTCAAACCATTGGT
TAAGGTAGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAAGAAGGTAAAACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45