Detailed information NTG0682500

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: OHM49_RS09985
• Genome accession: NZ_CP109940
• Coordinates: 2007205..2009304 (-)
• Length: 699 a.a.
• NCBI ID: WP_024394802.1
• Uniprot ID: -
• Organism: Streptococcus suis strain ID34572
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 2002205..2014304

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OHM49_RS09970 (OHM49_09970)	-	2002322..2003029 (+)	708	WP_004194205.1	UTRA domain-containing protein	-
OHM49_RS09975 (OHM49_09975)	glgP	2003258..2005522 (-)	2265	WP_024394804.1	glycogen/starch/alpha-glucan family phosphorylase	-
OHM49_RS09980 (OHM49_09980)	malQ	2005515..2007023 (-)	1509	WP_024394803.1	4-alpha-glucanotransferase	-
OHM49_RS09985 (OHM49_09985)	clpC	2007205..2009304 (-)	2100	WP_024394802.1	AAA family ATPase	Regulator
OHM49_RS09990 (OHM49_09990)	-	2009828..2010238 (-)	411	WP_024394801.1	peptide deformylase	-
OHM49_RS09995 (OHM49_09995)	-	2010268..2011440 (-)	1173	WP_024394800.1	peptidoglycan bridge formation glycyltransferase FemA/FemB family protein	-
OHM49_RS10000 (OHM49_10000)	-	2011440..2012666 (-)	1227	WP_249547146.1	peptidoglycan bridge formation glycyltransferase FemA/FemB family protein	-
OHM49_RS10005 (OHM49_10005)	-	2012962..2013690 (-)	729	WP_024394799.1	MerR family transcriptional regulator	-
OHM49_RS10010 (OHM49_10010)	-	2013753..2014193 (-)	441	WP_023369429.1	UPF0158 family protein	-

Sequence

Protein

• Length: 699 a.a.
• Molecular weight: 77267.08 Da
• Isoelectric Point: 4.7652

>NTDB_id=682500 OHM49_RS09985 WP_024394802.1 2007205..2009304(-) (clpC) [Streptococcus suis strain ID34572]
MNNNFNNFNNMDDIFNQLMGNIGGYSTEGRRYSINGREVTPEEFAMYRQTGRLPQTEEVAQTQAKGQIKSDGILAKLGRN
LTQDAREGKLDPVIGRNKEIQETSEILARRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDISGLEA
GTQYRGAFEENVQNLVDEVKKAGNIILFFDEIHQILGAGSTGGDTGSKGLADILKPALSRGELTVIGATTQDEYRNTIHK
NAALARRFNEVKVNAPSAEDTYQILKGIKPLYEAHHNIELPDEVLRAAVDYSVQYIPQRSLPDKAIDLIDVTAAHLAAQH
PVTDIQTLEAEMAEAKQLQLEAAEKEDYEKALNEKVRIDKLQKQIDNHTEQQKVVATVNDVAQAVERMTGIPVSQMGASD
IERLKELKNRLAANVIGQDDAVEAVSRAIRRNRAGFDDGNRPIGSFLFVGPTGVGKTELAKQLALDLFGNKDAIIRLDMS
EYSDRTAVSKLIGTTAGYIGYDDNSHTLTERVRRNPYSIVLLDEIEKADSQVITLLLQVLDDGHLTDGQGNQVNFKNTII
IATSNAGFGYGMAEGEENQDIMDRIAPFFRPEFLNRFNAVIEFKHLDKDDLKAIVELLLAQVNNTLAKKGIQLMVTEAAK
EFLMEEGYDKAMGARPLRRVIENQIRDKVTDYYLDHVDVKYLEADVVDGSIQIKEQSFD

Nucleotide

• Length: 2100 bp

>NTDB_id=682500 OHM49_RS09985 WP_024394802.1 2007205..2009304(-) (clpC) [Streptococcus suis strain ID34572]
ATGAACAACAATTTCAATAACTTTAACAATATGGACGACATTTTCAATCAACTTATGGGCAATATAGGTGGTTACAGTAC
AGAAGGTCGCCGTTATTCTATCAATGGGCGTGAAGTGACACCAGAAGAATTTGCTATGTACCGTCAGACTGGTCGCCTGC
CACAGACAGAAGAAGTGGCTCAAACACAGGCTAAAGGTCAGATAAAGTCAGATGGAATTCTTGCAAAATTGGGTCGCAAT
TTGACACAAGATGCGCGTGAAGGGAAGTTGGATCCAGTCATTGGACGAAACAAGGAAATTCAAGAAACCTCTGAAATCCT
AGCTCGCCGTACGAAAAATAATCCTGTTTTGGTCGGTGATGCTGGTGTTGGTAAAACTGCGGTAGTAGAAGGATTGGCTC
AAGCCATTGTCAATGGTGATGTGCCAGCAGCCATTAAGAACAAGGAAATCATCTCCATCGACATTTCAGGCTTGGAAGCT
GGGACTCAGTATCGTGGGGCTTTTGAGGAAAATGTGCAAAATCTTGTGGATGAAGTCAAAAAAGCTGGAAATATCATTCT
CTTCTTTGATGAAATTCATCAGATTTTGGGAGCTGGTAGCACTGGTGGGGACACAGGTTCCAAGGGTTTAGCGGATATTC
TCAAACCAGCTTTATCCCGTGGGGAATTGACGGTTATCGGTGCCACTACACAGGACGAATACCGCAATACCATTCACAAG
AATGCTGCTCTGGCTCGTCGTTTCAATGAAGTCAAGGTCAATGCTCCGTCCGCAGAGGACACCTACCAGATTTTGAAAGG
GATCAAGCCGCTTTATGAAGCCCACCACAATATTGAATTGCCAGATGAGGTTTTGAGAGCTGCGGTTGATTATTCTGTCC
AATATATTCCACAACGTAGCTTGCCTGATAAGGCTATTGACCTGATCGATGTGACCGCTGCACATTTGGCTGCACAACAT
CCTGTGACAGATATTCAGACCTTGGAAGCAGAAATGGCTGAGGCAAAACAGTTGCAGTTGGAAGCAGCTGAAAAAGAGGA
TTATGAAAAAGCCTTGAATGAAAAAGTCCGTATTGATAAGCTACAAAAACAGATTGATAATCATACGGAGCAACAGAAAG
TGGTGGCGACTGTTAATGATGTGGCTCAGGCGGTTGAGCGCATGACAGGAATTCCAGTCTCACAAATGGGAGCTTCTGAT
ATTGAACGACTCAAGGAATTGAAAAATCGTCTGGCAGCTAACGTTATCGGTCAAGACGATGCGGTGGAAGCTGTATCTCG
TGCCATTCGTCGTAACCGAGCAGGTTTTGATGACGGCAACCGTCCGATTGGTTCCTTCCTCTTTGTCGGTCCGACAGGTG
TGGGTAAGACAGAGTTGGCAAAACAGTTAGCGCTAGACTTGTTTGGTAACAAGGATGCCATTATTCGTTTGGATATGTCT
GAATACAGCGATCGGACAGCCGTTTCCAAATTAATCGGTACCACAGCTGGCTACATTGGCTACGATGACAATTCCCATAC
TCTTACCGAGCGTGTCCGCCGCAATCCGTACTCAATCGTTCTTCTGGATGAGATTGAAAAAGCTGATTCACAAGTGATTA
CCCTTCTCTTGCAAGTGCTAGATGATGGGCATTTGACTGATGGACAGGGCAACCAAGTTAACTTTAAAAATACTATTATT
ATCGCGACTTCTAATGCTGGTTTTGGTTATGGAATGGCAGAAGGTGAAGAAAATCAAGACATCATGGACCGCATCGCACC
ATTCTTCCGTCCGGAGTTCCTTAATCGTTTTAACGCAGTTATCGAATTCAAGCACTTGGATAAAGATGATCTCAAAGCCA
TTGTAGAATTACTCTTGGCCCAGGTCAATAATACCCTGGCGAAGAAAGGCATCCAATTAATGGTAACGGAAGCTGCCAAA
GAATTTTTGATGGAAGAAGGCTATGACAAGGCCATGGGAGCCCGTCCTCTGCGCCGTGTGATTGAAAATCAGATTCGAGA
CAAGGTAACAGATTACTATTTGGATCATGTTGATGTCAAATATCTGGAAGCGGATGTGGTTGATGGAAGCATCCAAATAA
AAGAGCAAAGCTTTGATTAA

Domains

Predicted by InterProScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (441-599)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (606-676)

• ATPase family associated with various cellular activities (AAA) (AAA) (116-249)

• AAA lid domain (AAA_lid_9) (257-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Lactococcus lactis subsp. cremoris KW2	47.242	100	0.478
clpE	Streptococcus pneumoniae Rx1	49.689	92.132	0.458
clpE	Streptococcus pneumoniae D39	49.689	92.132	0.458
clpE	Streptococcus pneumoniae R6	49.689	92.132	0.458
clpE	Streptococcus pneumoniae TIGR4	49.689	92.132	0.458
clpE	Streptococcus mutans UA159	49.61	91.702	0.455
clpC	Bacillus subtilis subsp. subtilis str. 168	44.582	92.418	0.412
clpC	Streptococcus pneumoniae Rx1	41.467	95.565	0.396
clpC	Streptococcus pneumoniae D39	41.467	95.565	0.396
clpC	Streptococcus pneumoniae TIGR4	41.229	95.422	0.393
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	40.944	93.991	0.385
clpC	Streptococcus mutans UA159	43.204	88.412	0.382
clpC	Streptococcus thermophilus LMD-9	42.56	89.413	0.381
clpC	Streptococcus thermophilus LMG 18311	42.4	89.413	0.379