Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OHM49_RS09890 Genome accession   NZ_CP109940
Coordinates   1986024..1986641 (+) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain ID34572     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1981024..1991641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM49_RS09860 (OHM49_09860) - 1981127..1981609 (+) 483 WP_004194159.1 S-ribosylhomocysteine lyase -
  OHM49_RS09865 (OHM49_09865) - 1981830..1983284 (-) 1455 WP_024394810.1 cell division site-positioning protein MapZ family protein -
  OHM49_RS09870 (OHM49_09870) - 1983294..1984460 (-) 1167 WP_024394809.1 class I SAM-dependent RNA methyltransferase -
  OHM49_RS09880 (OHM49_09880) gpsB 1985016..1985351 (-) 336 WP_004194167.1 cell division regulator GpsB -
  OHM49_RS09885 (OHM49_09885) - 1985419..1985958 (-) 540 WP_029174574.1 DUF1273 domain-containing protein -
  OHM49_RS09890 (OHM49_09890) recU 1986024..1986641 (+) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  OHM49_RS09895 (OHM49_09895) pbp1a 1986622..1988796 (+) 2175 WP_024381720.1 penicillin-binding protein PBP1A -
  OHM49_RS09900 (OHM49_09900) rsmG 1988855..1989568 (+) 714 WP_024381721.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  OHM49_RS09905 (OHM49_09905) - 1989610..1989813 (-) 204 WP_014637517.1 cold-shock protein -
  OHM49_RS09910 (OHM49_09910) - 1989973..1990806 (-) 834 WP_024394808.1 energy-coupling factor transporter transmembrane protein EcfT -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=682499 OHM49_RS09890 WP_004194173.1 1986024..1986641(+) (recU) [Streptococcus suis strain ID34572]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=682499 OHM49_RS09890 WP_004194173.1 1986024..1986641(+) (recU) [Streptococcus suis strain ID34572]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTTAAACAAGGTGGTATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473