Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   M1S41_RS01620 Genome accession   NZ_CP096688
Coordinates   347531..348013 (+) Length   160 a.a.
NCBI ID   WP_001046420.1    Uniprot ID   A0A7U3Y2Y6
Organism   Acinetobacter baumannii strain 5840     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 342531..353013
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1S41_RS01610 (M1S41_01610) pilX 342834..343652 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  M1S41_RS01615 (M1S41_01615) pilY1 343664..347518 (+) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  M1S41_RS01620 (M1S41_01620) pilY2 347531..348013 (+) 483 WP_001046420.1 type IV pilin protein Machinery gene
  M1S41_RS01625 (M1S41_01625) pilE 348010..348435 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  M1S41_RS01630 (M1S41_01630) rpsP 348582..348833 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  M1S41_RS01635 (M1S41_01635) rimM 348853..349401 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  M1S41_RS01640 (M1S41_01640) trmD 349447..350187 (+) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  M1S41_RS01645 (M1S41_01645) rplS 350396..350764 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  M1S41_RS01650 (M1S41_01650) - 350817..351758 (-) 942 WP_085916958.1 triacylglycerol lipase -
  M1S41_RS01655 (M1S41_01655) - 351873..352907 (-) 1035 WP_001189447.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17548.77 Da        Isoelectric Point: 8.4817

>NTDB_id=682444 M1S41_RS01620 WP_001046420.1 347531..348013(+) (pilY2) [Acinetobacter baumannii strain 5840]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=682444 M1S41_RS01620 WP_001046420.1 347531..348013(+) (pilY2) [Acinetobacter baumannii strain 5840]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y2Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

40.116

100

0.431