Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   OHM47_RS09375 Genome accession   NZ_CP109939
Coordinates   1877914..1878690 (-) Length   258 a.a.
NCBI ID   WP_024394875.1    Uniprot ID   -
Organism   Streptococcus suis strain ID36054     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1872914..1883690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM47_RS09350 (OHM47_09350) - 1873128..1873964 (+) 837 WP_009909131.1 AraC family transcriptional regulator -
  OHM47_RS09355 (OHM47_09355) tsaD 1874001..1875008 (-) 1008 WP_024394329.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  OHM47_RS09360 (OHM47_09360) rimI 1874998..1875438 (-) 441 WP_024394328.1 ribosomal protein S18-alanine N-acetyltransferase -
  OHM47_RS09365 (OHM47_09365) tsaB 1875435..1876118 (-) 684 WP_249547164.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  OHM47_RS09370 (OHM47_09370) - 1876485..1877648 (+) 1164 Protein_1810 IS30 family transposase -
  OHM47_RS09375 (OHM47_09375) recX 1877914..1878690 (-) 777 WP_024394875.1 recombination regulator RecX Regulator
  OHM47_RS09380 (OHM47_09380) rlmD 1878728..1880080 (+) 1353 WP_012775501.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  OHM47_RS09385 (OHM47_09385) - 1880365..1880568 (+) 204 Protein_1813 transposase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 30405.95 Da        Isoelectric Point: 9.1130

>NTDB_id=682396 OHM47_RS09375 WP_024394875.1 1877914..1878690(-) (recX) [Streptococcus suis strain ID36054]
MRITKIEKKKRLYLLEVDGQDSLYITEDTIVRFMLSKGKEITEQEFCELRDFAQFSYGKNLALYYLSFKQRTKKEVSDYL
KKYEIEENNIVKIVTVLEEEKWLDDGNYVDSYVRQNALNGDKGPAMIRQKLMQKGIPKLLIDKRLAEEDFSELAGKIGEK
LVGRYQRKLPLRALQDKVVQGLMGKGFSYETAKQSLGQLELVADEENEDDLIAKELDKQYRKYSRKYEGYELKQRLIQAL
ARKGYDFDRIQAVLRDYR

Nucleotide


Download         Length: 777 bp        

>NTDB_id=682396 OHM47_RS09375 WP_024394875.1 1877914..1878690(-) (recX) [Streptococcus suis strain ID36054]
ATGAGAATTACAAAAATTGAAAAGAAGAAACGTCTTTATTTACTTGAAGTGGATGGTCAGGATAGTTTATATATTACGGA
AGACACAATTGTTCGCTTCATGCTTAGTAAGGGAAAGGAAATCACGGAGCAGGAGTTTTGTGAGCTTCGCGATTTTGCTC
AGTTTTCTTATGGGAAAAATCTAGCACTTTATTACCTTTCCTTCAAGCAACGTACCAAAAAAGAAGTTAGTGATTATCTA
AAAAAATATGAAATTGAAGAAAACAATATTGTTAAGATAGTGACGGTACTAGAAGAGGAAAAATGGCTGGACGATGGGAA
TTATGTTGATAGCTATGTCCGTCAGAATGCTCTAAATGGAGATAAGGGACCAGCTATGATTCGTCAGAAGTTGATGCAGA
AAGGAATTCCTAAACTGCTGATTGATAAAAGGCTGGCAGAGGAAGATTTTTCAGAGCTTGCTGGGAAGATTGGGGAGAAA
TTGGTGGGTAGATACCAAAGAAAATTGCCTCTTCGAGCTTTGCAAGATAAAGTTGTACAGGGATTGATGGGGAAGGGTTT
TTCTTATGAGACGGCCAAACAAAGCCTGGGTCAGTTGGAACTTGTGGCTGATGAGGAAAATGAAGATGATTTAATCGCCA
AGGAATTGGATAAGCAGTATAGAAAATATAGTCGTAAATATGAAGGCTACGAATTGAAGCAAAGGTTGATACAGGCTTTG
GCTCGAAAGGGTTATGACTTTGATCGGATTCAGGCTGTCCTTCGTGATTATCGGTAA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(80-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

35.581

100

0.368