Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OHM47_RS07010 Genome accession   NZ_CP109939
Coordinates   1362556..1364217 (-) Length   553 a.a.
NCBI ID   WP_024402066.1    Uniprot ID   -
Organism   Streptococcus suis strain ID36054     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1357556..1369217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM47_RS06970 (OHM47_06970) - 1357856..1358080 (-) 225 WP_053866474.1 hypothetical protein -
  OHM47_RS06975 (OHM47_06975) - 1358086..1358400 (-) 315 WP_079739438.1 YdbC family protein -
  OHM47_RS06980 (OHM47_06980) - 1358397..1358735 (-) 339 WP_053866473.1 hypothetical protein -
  OHM47_RS06985 (OHM47_06985) - 1359093..1359956 (-) 864 WP_053866477.1 replication initiator protein A -
  OHM47_RS06990 (OHM47_06990) - 1359969..1360130 (-) 162 WP_053866472.1 hypothetical protein -
  OHM47_RS06995 (OHM47_06995) - 1360235..1360831 (-) 597 WP_002936249.1 YpmS family protein -
  OHM47_RS07000 (OHM47_07000) - 1360803..1361636 (-) 834 WP_002936251.1 SGNH/GDSL hydrolase family protein -
  OHM47_RS07005 (OHM47_07005) - 1361629..1362462 (-) 834 WP_024394992.1 DegV family protein -
  OHM47_RS07010 (OHM47_07010) recN 1362556..1364217 (-) 1662 WP_024402066.1 DNA repair protein RecN Machinery gene
  OHM47_RS07015 (OHM47_07015) - 1364220..1364645 (-) 426 WP_002936261.1 arginine repressor -
  OHM47_RS07020 (OHM47_07020) - 1364638..1365459 (-) 822 WP_024417707.1 TlyA family RNA methyltransferase -
  OHM47_RS07025 (OHM47_07025) - 1365452..1366321 (-) 870 WP_043033031.1 polyprenyl synthetase family protein -
  OHM47_RS07030 (OHM47_07030) - 1366321..1366536 (-) 216 WP_002936269.1 exodeoxyribonuclease VII small subunit -
  OHM47_RS07035 (OHM47_07035) xseA 1366511..1367854 (-) 1344 WP_024417708.1 exodeoxyribonuclease VII large subunit -
  OHM47_RS07040 (OHM47_07040) - 1368021..1368929 (+) 909 WP_012775292.1 neutral zinc metallopeptidase -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 62747.94 Da        Isoelectric Point: 4.6542

>NTDB_id=682378 OHM47_RS07010 WP_024402066.1 1362556..1364217(-) (recN) [Streptococcus suis strain ID36054]
MLLEVSIKNFAIIEQVSLNFENGMTILSGETGAGKSIIIDAMNLMLGARATTDVIRHGAAKAEIEGLFSFENSRALEQIL
LEQGIEVADELIIRREILQNGRSVSRVNGQMVNLSVLKQIGQYLVDIHGQHDQEELMKSQHHIRLLDSFGEDEFWSLKDR
YQTTFDAYRSLRKRVLEKQKNEQEHKARIEMLEYQIAEIEAADLKSGEDIQLNQERDKLLNHKQIADTLTNAYALLDNED
FSSLNNLRSAMSDLQSLEEFDPDYKQLSSSLTEAYYVVEDVTKRLSDVVDNLDFDGNRLMQLESRLDLLNTITKKYGGTV
DDVLDYFSKISEEYNLLTGNDLSGDDLEVQLKNLEKELVERAGQLSQSRHELAVVLEDIIRQELQDLYMEKARFQVRFTK
GKFNREGNETVEFYISTNPGEDFKPLVKVASGGELSRLMLAIKSAFARKEGKTSIVFDEVDTGVSGRVAQAIAQKIYKIG
QYGQVLAISHLPQVIAIADYQFFIEKISDEHSTVSRVRLLTKEERIEEIAKMLAGDKITDAARNQAKELVEKG

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=682378 OHM47_RS07010 WP_024402066.1 1362556..1364217(-) (recN) [Streptococcus suis strain ID36054]
ATGTTACTAGAAGTGTCCATTAAAAACTTCGCCATTATTGAGCAGGTATCACTGAATTTTGAAAACGGGATGACCATCCT
ATCTGGTGAAACAGGTGCAGGTAAATCCATTATCATTGATGCCATGAACCTGATGCTAGGGGCGCGTGCGACGACAGATG
TTATCAGACATGGGGCCGCCAAGGCTGAGATTGAAGGGCTCTTTTCCTTTGAAAATAGCAGAGCTCTCGAGCAGATTTTG
CTTGAACAGGGGATTGAAGTAGCTGACGAGCTCATTATCCGTCGTGAAATCCTACAAAATGGCCGTTCGGTCAGCCGTGT
CAATGGACAAATGGTCAATTTATCTGTCTTGAAACAGATTGGGCAATATTTAGTAGATATTCATGGTCAACATGACCAGG
AAGAATTGATGAAATCCCAGCACCATATCCGTCTTTTGGACAGTTTCGGAGAAGATGAATTTTGGAGTCTTAAAGACCGT
TATCAGACAACCTTTGATGCCTATCGTAGTCTTCGCAAACGAGTTCTTGAAAAGCAAAAAAATGAGCAAGAACACAAGGC
GCGGATTGAGATGTTGGAATACCAAATTGCTGAAATCGAAGCAGCGGATTTGAAGTCTGGTGAAGATATTCAACTCAATC
AGGAACGAGATAAACTGCTCAACCACAAACAAATTGCAGATACACTGACCAATGCCTATGCACTGTTAGACAATGAAGAT
TTTTCAAGCTTGAACAACCTACGCTCAGCTATGAGTGACTTGCAAAGTCTGGAAGAATTTGATCCAGACTACAAACAGCT
CTCTTCTAGCCTGACAGAAGCTTATTATGTCGTTGAAGATGTGACCAAGCGTCTCAGCGATGTGGTCGATAATCTAGATT
TTGACGGCAATCGTCTCATGCAATTGGAAAGTCGTCTGGATTTGCTCAATACCATTACGAAGAAATATGGCGGAACTGTC
GATGATGTTTTGGACTATTTTAGTAAAATCAGTGAAGAATACAATTTATTGACAGGCAATGATTTATCTGGTGATGATTT
GGAAGTTCAGCTTAAGAACTTAGAGAAAGAATTGGTTGAACGAGCAGGTCAGCTCAGCCAATCACGCCATGAATTGGCTG
TTGTTTTAGAAGATATTATTCGCCAAGAATTGCAAGACTTGTATATGGAGAAAGCTCGTTTCCAAGTTCGATTTACTAAA
GGAAAATTTAATCGAGAAGGAAATGAAACAGTCGAATTTTACATCTCTACCAACCCAGGTGAAGACTTCAAGCCTCTGGT
TAAGGTGGCTTCTGGAGGAGAATTGTCTCGCTTGATGTTGGCCATTAAGTCAGCCTTTGCCCGTAAGGAAGGCAAGACTT
CTATTGTCTTTGATGAGGTGGATACAGGGGTGTCTGGACGTGTGGCCCAGGCAATTGCCCAGAAAATTTATAAAATCGGA
CAATATGGTCAAGTATTGGCGATTTCTCATCTACCACAAGTCATTGCTATTGCAGATTATCAGTTCTTTATTGAGAAAAT
ATCCGACGAACATTCGACTGTTTCTCGTGTCCGTCTCTTGACCAAAGAAGAGCGTATTGAGGAAATTGCCAAGATGTTAG
CCGGTGACAAAATCACAGATGCAGCCCGTAATCAAGCAAAAGAATTAGTAGAAAAAGGTTAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

43.684

100

0.45