Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   OHM52_RS09940 Genome accession   NZ_CP109937
Coordinates   1990742..1991359 (+) Length   205 a.a.
NCBI ID   WP_004194173.1    Uniprot ID   A0A0H3N278
Organism   Streptococcus suis strain TRG6     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1985742..1996359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM52_RS09910 (OHM52_09910) - 1985844..1986326 (+) 483 WP_004194159.1 S-ribosylhomocysteine lyase -
  OHM52_RS09915 (OHM52_09915) - 1986548..1988002 (-) 1455 WP_024394810.1 cell division site-positioning protein MapZ family protein -
  OHM52_RS09920 (OHM52_09920) - 1988012..1989178 (-) 1167 WP_024394809.1 class I SAM-dependent RNA methyltransferase -
  OHM52_RS09930 (OHM52_09930) gpsB 1989734..1990069 (-) 336 WP_004194167.1 cell division regulator GpsB -
  OHM52_RS09935 (OHM52_09935) - 1990137..1990676 (-) 540 WP_172001242.1 DUF1273 domain-containing protein -
  OHM52_RS09940 (OHM52_09940) recU 1990742..1991359 (+) 618 WP_004194173.1 Holliday junction resolvase RecU Machinery gene
  OHM52_RS09945 (OHM52_09945) pbp1a 1991340..1993514 (+) 2175 WP_024417378.1 penicillin-binding protein PBP1A -
  OHM52_RS09950 (OHM52_09950) rsmG 1993573..1994269 (+) 697 Protein_1920 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  OHM52_RS09955 (OHM52_09955) - 1994462..1994662 (-) 201 WP_024417379.1 cold-shock protein -
  OHM52_RS09960 (OHM52_09960) - 1994822..1995655 (-) 834 WP_264516767.1 energy-coupling factor transporter transmembrane protein EcfT -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23805.40 Da        Isoelectric Point: 9.9440

>NTDB_id=682303 OHM52_RS09940 WP_004194173.1 1990742..1991359(+) (recU) [Streptococcus suis strain TRG6]
MVNYPHKVSKKINRTSPISSQRVNFANRGMSFEAAINDSNQYYLAHDIAVIHKKPTPVQIVKVDYPKRSRAKIVEAYFRQ
ASTTDYSGVFKRHYIDFEAKETRQKASMPMKNFHAHQIEHMKQVVKQGGICFVLLHFSTLKETYLLPATHLIEFYQVDMG
SKSMPLTFIRQYGFEIQMGRFPSIPYLEIVEKNLLGGESFENYNN

Nucleotide


Download         Length: 618 bp        

>NTDB_id=682303 OHM52_RS09940 WP_004194173.1 1990742..1991359(+) (recU) [Streptococcus suis strain TRG6]
ATGGTCAATTATCCTCATAAGGTGTCAAAAAAAATCAATAGAACCAGTCCTATTTCATCCCAGCGAGTAAACTTTGCTAA
TCGCGGAATGTCTTTTGAGGCCGCTATCAACGATAGCAATCAATATTACCTTGCGCACGATATTGCTGTCATTCACAAGA
AGCCAACTCCCGTGCAAATTGTAAAAGTTGATTACCCCAAACGGAGCCGTGCTAAGATTGTCGAAGCATACTTTCGACAG
GCATCTACCACAGACTACTCTGGTGTTTTTAAAAGACATTATATTGATTTTGAAGCGAAAGAGACACGCCAAAAAGCATC
CATGCCCATGAAAAATTTTCATGCGCATCAGATTGAACACATGAAACAGGTTGTTAAACAAGGTGGTATTTGTTTTGTCC
TTCTTCACTTTTCAACATTAAAAGAAACCTATCTCTTGCCAGCCACTCATTTGATCGAATTTTATCAAGTAGACATGGGT
AGTAAGTCGATGCCTCTAACCTTTATTCGACAATACGGCTTTGAGATTCAAATGGGGCGTTTCCCCAGCATCCCATATCT
GGAAATCGTTGAAAAAAATCTATTAGGTGGTGAATCTTTTGAAAACTACAACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(28-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N278

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

48.744

97.073

0.473