Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHM52_RS08030 Genome accession   NZ_CP109937
Coordinates   1588319..1589053 (-) Length   244 a.a.
NCBI ID   WP_043033049.1    Uniprot ID   -
Organism   Streptococcus suis strain TRG6     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583319..1594053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM52_RS08000 (OHM52_08000) - 1583462..1584253 (-) 792 WP_024394467.1 class C sortase -
  OHM52_RS08005 (OHM52_08005) - 1584221..1584610 (+) 390 Protein_1550 transposase -
  OHM52_RS08010 (OHM52_08010) - 1584611..1584922 (-) 312 WP_225533365.1 hypothetical protein -
  OHM52_RS08015 (OHM52_08015) lepB 1585016..1585618 (-) 603 WP_032504114.1 signal peptidase I -
  OHM52_RS08020 (OHM52_08020) - 1585608..1585907 (-) 300 WP_015646549.1 hypothetical protein -
  OHM52_RS08025 (OHM52_08025) - 1587341..1588189 (-) 849 WP_024389423.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  OHM52_RS08030 (OHM52_08030) amiE 1588319..1589053 (-) 735 WP_043033049.1 amino acid ABC transporter ATP-binding protein Regulator
  OHM52_RS08035 (OHM52_08035) - 1589046..1589735 (-) 690 WP_002938702.1 amino acid ABC transporter permease -
  OHM52_RS08040 (OHM52_08040) - 1589860..1590090 (-) 231 WP_002938704.1 DUF1797 family protein -
  OHM52_RS08045 (OHM52_08045) clpE 1590314..1592542 (+) 2229 WP_024394468.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  OHM52_RS08050 (OHM52_08050) - 1592728..1593189 (+) 462 WP_002938708.1 NUDIX hydrolase -
  OHM52_RS08055 (OHM52_08055) - 1593244..1593552 (+) 309 WP_002938710.1 DUF1827 family protein -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26909.16 Da        Isoelectric Point: 4.7252

>NTDB_id=682285 OHM52_RS08030 WP_043033049.1 1588319..1589053(-) (amiE) [Streptococcus suis strain TRG6]
MSNAIISIKDLHKYFGKNEVLKGIDLDIQQGQVVVIIGPSGSGKSTFLRTMNLLEVPTKGTVTFEGVDITDKSNDIFKMR
EKMGMVFQQFNLFPNMTVLDNITLSPIKTKGIVKDEAEKKAKELLEKVGLPDKANAYPQSLSGGQQQRIAIARGLAMDPD
VLLFDEPTSALDPEMVGEVLAVMQDLAKSGMTMVIVTHEMGFAREVADRVIFMDGGVIVEDGTPEEVFEHTKEERTKDFL
SKVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=682285 OHM52_RS08030 WP_043033049.1 1588319..1589053(-) (amiE) [Streptococcus suis strain TRG6]
ATGTCTAATGCGATTATTTCTATCAAGGATTTACATAAGTACTTCGGAAAGAATGAGGTTCTAAAAGGAATTGATTTAGA
TATTCAACAAGGTCAGGTGGTCGTTATTATCGGTCCATCAGGGTCAGGGAAATCGACTTTCTTACGTACAATGAACCTCT
TAGAAGTGCCAACCAAGGGAACTGTTACATTTGAAGGTGTTGATATTACTGACAAGTCAAATGATATTTTCAAGATGCGT
GAAAAGATGGGAATGGTTTTTCAACAGTTCAATCTTTTTCCGAATATGACGGTATTAGATAATATTACTTTATCACCTAT
TAAGACAAAGGGAATCGTAAAGGATGAGGCTGAGAAGAAGGCTAAGGAATTACTTGAAAAGGTAGGATTGCCAGATAAGG
CGAATGCCTATCCACAAAGCCTTTCAGGTGGTCAGCAACAACGGATTGCTATTGCACGTGGTCTGGCCATGGACCCAGAT
GTCCTACTTTTTGATGAACCGACCTCTGCACTAGACCCTGAAATGGTTGGTGAAGTTCTTGCTGTAATGCAGGATTTGGC
CAAGTCAGGGATGACCATGGTTATCGTGACTCATGAGATGGGATTTGCGCGTGAGGTAGCTGACAGGGTTATCTTTATGG
ATGGCGGTGTCATCGTGGAGGATGGAACGCCTGAAGAAGTCTTTGAACATACCAAGGAAGAACGGACCAAGGATTTCTTG
TCTAAGGTCTTGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

34.496

100

0.365
  amiE Streptococcus thermophilus LMD-9

34.496

100

0.365
  amiE Streptococcus salivarius strain HSISS4

34.496

100

0.365