Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutX   Type   Machinery gene
Locus tag   OHM52_RS06245 Genome accession   NZ_CP109937
Coordinates   1236709..1237191 (+) Length   160 a.a.
NCBI ID   WP_002938080.1    Uniprot ID   -
Organism   Streptococcus suis strain TRG6     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1231709..1242191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM52_RS06220 (OHM52_06220) - 1232957..1234267 (-) 1311 WP_264516750.1 GntP family permease -
  OHM52_RS06225 (OHM52_06225) folK 1234318..1234806 (-) 489 WP_009910002.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  OHM52_RS06230 (OHM52_06230) folB 1234803..1235165 (-) 363 WP_002938086.1 dihydroneopterin aldolase -
  OHM52_RS06235 (OHM52_06235) folP 1235158..1235970 (-) 813 WP_044675545.1 dihydropteroate synthase -
  OHM52_RS06240 (OHM52_06240) folE 1235979..1236542 (-) 564 WP_002938082.1 GTP cyclohydrolase I FolE -
  OHM52_RS06245 (OHM52_06245) mutX 1236709..1237191 (+) 483 WP_002938080.1 8-oxo-dGTP diphosphatase Machinery gene
  OHM52_RS06250 (OHM52_06250) - 1237240..1237917 (-) 678 WP_002938079.1 DUF4956 domain-containing protein -
  OHM52_RS06255 (OHM52_06255) - 1237904..1238647 (-) 744 WP_002938076.1 polyphosphate polymerase domain-containing protein -
  OHM52_RS06260 (OHM52_06260) - 1238840..1239142 (+) 303 WP_002938072.1 hypothetical protein -
  OHM52_RS06265 (OHM52_06265) - 1239163..1239429 (-) 267 WP_002938070.1 DUF2087 domain-containing protein -
  OHM52_RS06270 (OHM52_06270) pheT 1239484..1241883 (-) 2400 WP_264516751.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 18496.88 Da        Isoelectric Point: 4.5662

>NTDB_id=682271 OHM52_RS06245 WP_002938080.1 1236709..1237191(+) (mutX) [Streptococcus suis strain TRG6]
MTKKPVQLATICYIDNGKEFLLLHRNKKENDVHQGKWIGVGGKLEPGETPQACAIREIFEETGLTVTKHALKGVITFPDF
TPNTDWYTYVFKITGFEGSLIDCNEGDLEWVPYDQVLSKPTWEGDRHFQEWLLEDKPFFSACFRYDGGKLLDYSVDFYEE

Nucleotide


Download         Length: 483 bp        

>NTDB_id=682271 OHM52_RS06245 WP_002938080.1 1236709..1237191(+) (mutX) [Streptococcus suis strain TRG6]
ATGACCAAGAAACCCGTCCAACTCGCTACGATTTGCTACATTGATAATGGTAAGGAATTTCTTCTCCTTCATCGAAACAA
GAAAGAAAACGATGTCCATCAAGGAAAATGGATTGGAGTTGGTGGCAAACTAGAACCCGGCGAAACGCCACAGGCTTGTG
CCATTCGAGAAATCTTTGAGGAAACTGGGCTTACTGTAACAAAGCATGCTCTAAAAGGAGTGATAACCTTCCCAGACTTT
ACTCCAAACACAGACTGGTACACCTATGTCTTTAAGATAACTGGTTTTGAAGGAAGTCTTATTGACTGCAATGAAGGTGA
CTTAGAGTGGGTTCCCTATGACCAAGTCTTGTCCAAACCAACTTGGGAGGGCGACCGGCATTTTCAAGAATGGCTATTAG
AGGACAAACCATTTTTTTCCGCTTGCTTCCGCTATGATGGGGGCAAACTGCTTGATTACAGTGTTGATTTTTATGAAGAA
TAA

Domains

Predicted by InterProScan.

NUDIX domain (NUDIX)

(8-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutX Streptococcus pneumoniae R6

81.046

95.625

0.775