Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M1M80_RS08030 Genome accession   NZ_CP096592
Coordinates   1625102..1625380 (+) Length   92 a.a.
NCBI ID   WP_003238863.1    Uniprot ID   A0A9Q4EYY4
Organism   Bacillus inaquosorum strain A65.1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1620102..1630380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1M80_RS08010 (M1M80_08010) - 1621293..1622204 (+) 912 WP_060398538.1 ketopantoate reductase family protein -
  M1M80_RS08015 (M1M80_08015) - 1622233..1623465 (-) 1233 WP_060398539.1 aminopeptidase -
  M1M80_RS08020 (M1M80_08020) - 1623577..1623711 (-) 135 WP_003238865.1 protein YkpC -
  M1M80_RS08025 (M1M80_08025) mreBH 1623812..1624819 (-) 1008 WP_029316824.1 cell shape-determining protein MreBH -
  M1M80_RS08030 (M1M80_08030) abrB 1625102..1625380 (+) 279 WP_003238863.1 transcriptional regulator AbhA Regulator
  M1M80_RS08035 (M1M80_08035) kinC 1625573..1626859 (+) 1287 WP_060398540.1 two-component sensor histidine kinase KinC -
  M1M80_RS08040 (M1M80_08040) - 1626875..1627702 (+) 828 WP_060398541.1 gamma-glutamylcyclotransferase -
  M1M80_RS08045 (M1M80_08045) ktrC 1627774..1628439 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  M1M80_RS08050 (M1M80_08050) ade 1628597..1630330 (+) 1734 WP_060398542.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=682102 M1M80_RS08030 WP_003238863.1 1625102..1625380(+) (abrB) [Bacillus inaquosorum strain A65.1]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSDNKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=682102 M1M80_RS08030 WP_003238863.1 1625102..1625380(+) (abrB) [Bacillus inaquosorum strain A65.1]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAATTAAGACGGGCACTGGA
TATTGCCATAAAAGACAGTATTGAATTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGTGTTT
GTTTAATGACCGGAGAAATCACTTCAGATAATAAAGAATACGGCAACGGTAAAATTACGTTAAGCCCAGAAGGTGCACAG
CTGCTTCTTGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

59.341

98.913

0.587