Detailed information NTG0682074

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA43_RS11985
• Genome accession: NZ_CP109932
• Coordinates: 2561172..2562176 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA43
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2556172..2567176

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA43_RS11955 (PALA43_02374)	fghA	2556264..2557115 (+)	852	WP_003117489.1	S-formylglutathione hydrolase	-
PALA43_RS11960 (PALA43_02375)	ispF	2557186..2557659 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA43_RS11965 (PALA43_02376)	truD	2557656..2558723 (+)	1068	WP_269972532.1	tRNA pseudouridine(13) synthase TruD	-
PALA43_RS11970 (PALA43_02377)	surE	2558711..2559460 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA43_RS11975 (PALA43_02378)	-	2559493..2560128 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA43_RS11980 (PALA43_02379)	-	2560174..2561067 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA43_RS11985 (PALA43_02380)	rpoS	2561172..2562176 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA43_RS11990 (PALA43_02381)	fdxA	2562603..2562926 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PALA43_RS11995 (PALA43_02382)	mutS	2562993..2565560 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA43_RS12000 (PALA43_02383)	-	2565686..2566693 (-)	1008	WP_021265158.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=682074 PALA43_RS11985 WP_003113871.1 2561172..2562176(+) (rpoS) [Pseudomonas aeruginosa strain PALA43]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=682074 PALA43_RS11985 WP_003113871.1 2561172..2562176(+) (rpoS) [Pseudomonas aeruginosa strain PALA43]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653