Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   M1M80_RS00245 Genome accession   NZ_CP096592
Coordinates   44296..44586 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus inaquosorum strain A65.1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 39296..49586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1M80_RS00205 (M1M80_00205) darA 39319..39648 (+) 330 WP_003218295.1 cyclic di-AMP receptor DarA -
  M1M80_RS00210 (M1M80_00210) - 39661..40101 (+) 441 WP_060397758.1 YaaR family protein -
  M1M80_RS00215 (M1M80_00215) holB 40113..41102 (+) 990 WP_084993281.1 DNA polymerase III subunit delta' -
  M1M80_RS00220 (M1M80_00220) ricT 41105..41932 (+) 828 WP_060397760.1 competence/sporulation regulator complex protein RicT -
  M1M80_RS00225 (M1M80_00225) yabA 41947..42306 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  M1M80_RS00230 (M1M80_00230) - 42365..43108 (+) 744 WP_060397761.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  M1M80_RS00235 (M1M80_00235) - 43095..43394 (+) 300 WP_003242154.1 GIY-YIG nuclease family protein -
  M1M80_RS00240 (M1M80_00240) rsmI 43369..44247 (+) 879 WP_060397762.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  M1M80_RS00245 (M1M80_00245) abrB 44296..44586 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  M1M80_RS00250 (M1M80_00250) metG 45081..47075 (+) 1995 WP_060397763.1 methionine--tRNA ligase -
  M1M80_RS00255 (M1M80_00255) - 47154..47921 (+) 768 WP_060397764.1 TatD family hydrolase -
  M1M80_RS00260 (M1M80_00260) - 48077..49390 (+) 1314 WP_060397765.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=682072 M1M80_RS00245 WP_003226760.1 44296..44586(-) (abrB) [Bacillus inaquosorum strain A65.1]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=682072 M1M80_RS00245 WP_003226760.1 44296..44586(-) (abrB) [Bacillus inaquosorum strain A65.1]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAATTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATTATCAGCGAAATCCAAAACCAACTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1