Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PALA43_RS07045 Genome accession   NZ_CP109932
Coordinates   1525603..1525968 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PALA43     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1520603..1530968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA43_RS07015 (PALA43_01396) pyrR 1521225..1521737 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  PALA43_RS07020 (PALA43_01397) ruvX 1521849..1522283 (-) 435 WP_023098361.1 Holliday junction resolvase RuvX -
  PALA43_RS07025 (PALA43_01398) - 1522283..1522852 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  PALA43_RS07030 (PALA43_01399) - 1522901..1523794 (-) 894 WP_269972471.1 energy transducer TonB -
  PALA43_RS07035 (PALA43_01400) gshB 1523941..1524894 (-) 954 WP_003110019.1 glutathione synthase -
  PALA43_RS07040 (PALA43_01401) pilG 1525149..1525556 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PALA43_RS07045 (PALA43_01402) pilH 1525603..1525968 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PALA43_RS07050 (PALA43_01403) - 1526019..1526555 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  PALA43_RS07055 (PALA43_01404) pilJ 1526640..1528688 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PALA43_RS07060 (PALA43_01405) pilK 1528749..1529624 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=682062 PALA43_RS07045 WP_003084587.1 1525603..1525968(+) (pilH) [Pseudomonas aeruginosa strain PALA43]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=682062 PALA43_RS07045 WP_003084587.1 1525603..1525968(+) (pilH) [Pseudomonas aeruginosa strain PALA43]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCAGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364