Detailed information NTG0682016

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PALA42_RS25385
• Genome accession: NZ_CP109931
• Coordinates: 5432010..5433014 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain PALA42
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5427010..5438014

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA42_RS25370 (PALA42_05020)	-	5427494..5428501 (+)	1008	WP_003092265.1	TolB family protein	-
PALA42_RS25375 (PALA42_05021)	mutS	5428627..5431194 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PALA42_RS25380 (PALA42_05022)	fdxA	5431261..5431584 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PALA42_RS25385 (PALA42_05023)	rpoS	5432010..5433014 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PALA42_RS25390 (PALA42_05024)	-	5433119..5434012 (-)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
PALA42_RS25395 (PALA42_05025)	-	5434058..5434693 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PALA42_RS25400 (PALA42_05026)	surE	5434726..5435475 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PALA42_RS25405 (PALA42_05027)	truD	5435463..5436530 (-)	1068	WP_003098559.1	tRNA pseudouridine(13) synthase TruD	-
PALA42_RS25410 (PALA42_05028)	ispF	5436527..5437000 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PALA42_RS25415 (PALA42_05029)	fghA	5437071..5437922 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=682016 PALA42_RS25385 WP_003113871.1 5432010..5433014(-) (rpoS) [Pseudomonas aeruginosa strain PALA42]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=682016 PALA42_RS25385 WP_003113871.1 5432010..5433014(-) (rpoS) [Pseudomonas aeruginosa strain PALA42]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653