Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   PALA42_RS23950 Genome accession   NZ_CP109931
Coordinates   5123794..5124399 (-) Length   201 a.a.
NCBI ID   WP_003091706.1    Uniprot ID   A0A0H2ZDR8
Organism   Pseudomonas aeruginosa strain PALA42     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 5118794..5129399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA42_RS23935 (PALA42_04736) - 5119904..5120779 (+) 876 WP_003091703.1 M24 family metallopeptidase -
  PALA42_RS23940 (PALA42_04737) - 5120776..5122554 (+) 1779 WP_043088632.1 SDR family oxidoreductase -
  PALA42_RS23945 (PALA42_04738) - 5122564..5123451 (+) 888 WP_003113144.1 metal-dependent hydrolase -
  PALA42_RS23950 (PALA42_04739) clpP 5123794..5124399 (-) 606 WP_003091706.1 ATP-dependent Clp protease proteolytic subunit Regulator

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22142.22 Da        Isoelectric Point: 5.3571

>NTDB_id=682013 PALA42_RS23950 WP_003091706.1 5123794..5124399(-) (clpP) [Pseudomonas aeruginosa strain PALA42]
MKTDDKDREGGDSHGAIGAKLMEYALKVRKVFVTGGVDEKMAKDVVQQLHILASISDDPIYMFVNSPGGHVESGDMIFDA
IRFITPKVIMIGSGSVASAGALIYAAADKENRYSLPNTRFLLHQPSGGIQGPASNIEIYRREIVRMKERLDRIFAEATGQ
TPEKISADTERDFWLNAEEAVQYGLVNKIIVSEREITLPGQ

Nucleotide


Download         Length: 606 bp        

>NTDB_id=682013 PALA42_RS23950 WP_003091706.1 5123794..5124399(-) (clpP) [Pseudomonas aeruginosa strain PALA42]
ATGAAAACCGATGACAAGGACCGCGAAGGCGGCGACTCCCACGGCGCCATCGGCGCCAAGCTGATGGAGTACGCGCTCAA
GGTCAGGAAGGTGTTCGTCACCGGCGGGGTCGACGAGAAGATGGCCAAGGACGTCGTCCAGCAGCTGCACATCCTCGCCT
CGATCAGCGACGATCCGATCTACATGTTCGTCAATTCCCCGGGTGGCCACGTCGAGTCCGGCGACATGATCTTCGACGCG
ATCCGCTTCATCACACCGAAGGTCATCATGATCGGTTCCGGCAGCGTAGCCAGCGCCGGCGCGCTGATCTACGCGGCGGC
GGACAAGGAAAACCGCTATTCGCTGCCCAATACCCGCTTCCTCCTGCACCAGCCGTCGGGTGGCATCCAGGGGCCGGCGA
GCAACATCGAGATCTACCGCCGCGAGATCGTGCGGATGAAGGAACGCCTCGACCGGATCTTCGCCGAAGCCACCGGGCAG
ACGCCGGAAAAGATCAGTGCCGACACCGAGCGCGACTTCTGGCTGAACGCGGAAGAAGCCGTGCAGTACGGCCTGGTCAA
CAAGATCATCGTTTCGGAACGGGAGATCACGCTGCCTGGCCAGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(19-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZDR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

43.195

84.08

0.363