Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PALA42_RS22985 Genome accession   NZ_CP109931
Coordinates   4923397..4923726 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA42     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4918397..4928726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA42_RS22970 (PALA42_04548) uvrB 4919784..4921796 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  PALA42_RS22975 (PALA42_04549) - 4921984..4923180 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  PALA42_RS22985 (PALA42_04551) comEA/comE1 4923397..4923726 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  PALA42_RS22990 (PALA42_04552) - 4923917..4925914 (-) 1998 WP_009313767.1 polysaccharide biosynthesis protein -
  PALA42_RS22995 (PALA42_04553) - 4926045..4927070 (-) 1026 WP_009313766.1 MraY family glycosyltransferase -
  PALA42_RS23000 (PALA42_04554) - 4927067..4928026 (-) 960 WP_004350973.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=682011 PALA42_RS22985 WP_003091430.1 4923397..4923726(-) (comEA/comE1) [Pseudomonas aeruginosa strain PALA42]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=682011 PALA42_RS22985 WP_003091430.1 4923397..4923726(-) (comEA/comE1) [Pseudomonas aeruginosa strain PALA42]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385